RNA–Protein interactions for RNA: ENST00000431640.5

DDX56-204, Transcript of DEAD-box helicase 56, humanhuman

TSL 1 (best) BASIC

Gene DDX56, Length 1,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-204ENST00000431640 ZNF276Q8N554 614 aa13.15□□□□□ -0.3
DDX56-204ENST00000431640 OR10T2Q8NGX3 314 aa13.15□□□□□ -0.3
DDX56-204ENST00000431640 ACMSDQ8TDX5 336 aa13.15□□□□□ -0.3
DDX56-204ENST00000431640 OXNAD1Q96HP4 312 aaPredicted RBP13.15□□□□□ -0.3
DDX56-204ENST00000431640 KLF6Q99612 283 aaPredicted RBP13.15□□□□□ -0.3
DDX56-204ENST00000431640 SLC40A1Q9NP59 571 aa13.15□□□□□ -0.3
DDX56-204ENST00000431640 TMLHEQ9NVH6 421 aa13.15□□□□□ -0.3
DDX56-204ENST00000431640 ARHGEF38Q9NXL2 777 aa13.15□□□□□ -0.3
DDX56-204ENST00000431640 BFARQ9NZS9 450 aa13.15□□□□□ -0.3
DDX56-204ENST00000431640 SLC17A7Q9P2U7 560 aa13.15□□□□□ -0.3
DDX56-204ENST00000431640 PRKAG2Q9UGJ0 569 aa13.15□□□□□ -0.3
DDX56-204ENST00000431640 PLLPQ9Y342 182 aa13.15□□□□□ -0.3
DDX56-204ENST00000431640 LAMA3Q16787 3333 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 ABHD14A-ACY1A0A1B0GW23 586 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 RFPL1O75677 317 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 UBOX5O94941 541 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 UPP2O95045 317 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 OAZ2O95190 189 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 AP2A1O95782 977 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 CRHR1P34998 444 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 GARSP41250 739 aaKnown RBP13.14□□□□□ -0.31
DDX56-204ENST00000431640 GRIA1P42261 906 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 EIF4EBP2Q13542 120 aaPredicted RBP13.14□□□□□ -0.31
DDX56-204ENST00000431640 FRG1Q14331 258 aaKnown RBP13.14□□□□□ -0.31
DDX56-204ENST00000431640 NFE2Q16621 373 aaPredicted RBP13.14□□□□□ -0.31
DDX56-204ENST00000431640 TEX44Q53QW1 395 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 FAM133BQ5BKY9 247 aaKnown RBP13.14□□□□□ -0.31
DDX56-204ENST00000431640 NOMO2Q5JPE7 1267 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 OTOAQ7RTW8 1153 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 TAC4Q86UU9 113 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 FITM2Q8N6M3 262 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 RAB3IL1Q8TBN0 382 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 DQX1Q8TE96 717 aaKnown RBP13.14□□□□□ -0.31
DDX56-204ENST00000431640 DPF3Q92784 378 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 TOP1MTQ969P6 601 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 ZNF689Q96CS4 500 aaPredicted RBP13.14□□□□□ -0.31
DDX56-204ENST00000431640 FUBP3Q96I24 572 aaKnown RBP eCLIP13.14□□□□□ -0.31
DDX56-204ENST00000431640 PPP1R2P1Q96PQ5 205 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 FAM193BQ96PV7 902 aaPredicted RBP13.14□□□□□ -0.31
DDX56-204ENST00000431640 LRRC37BQ96QE4 947 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 SRPK1Q96SB4 655 aaKnown RBP13.14□□□□□ -0.31
DDX56-204ENST00000431640 RHOBTB2Q9BYZ6 727 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 CATSPERBQ9H7T0 1116 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 LRRC40Q9H9A6 602 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 ANLNQ9NQW6 1124 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 SMYD2Q9NRG4 433 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 KLC4Q9NSK0 619 aa13.14□□□□□ -0.31
DDX56-204ENST00000431640 GBF1Q92538 1859 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 COL4A4P53420 1690 aaPredicted RBP13.13□□□□□ -0.31
DDX56-204ENST00000431640 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.13□□□□□ -0.31
DDX56-204ENST00000431640 FGF10O15520 208 aaPredicted RBP13.13□□□□□ -0.31
DDX56-204ENST00000431640 LRIG2O94898 1065 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 CCNCP24863 283 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 MGAT1P26572 445 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 CCR1P32246 355 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 PBX3P40426 434 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 SESN2P58004 480 aaPredicted RBP13.13□□□□□ -0.31
DDX56-204ENST00000431640 MGAT5Q09328 741 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 PPP2R5DQ14738 602 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 DBN1Q16643 649 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 SPRED3Q2MJR0 410 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 C9orf50Q5SZB4 431 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 FBXW10Q5XX13 1052 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 ATG16L1Q676U5 607 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 FAM117BQ6P1L5 589 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 TRMT10BQ6PF06 316 aaKnown RBP13.13□□□□□ -0.31
DDX56-204ENST00000431640 LRRC49Q8IUZ0 686 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 COLGALT2Q8IYK4 626 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 ARHGAP18Q8N392 663 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 HASPINQ8TF76 798 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 ARNTL2Q8WYA1 636 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 TSGA13Q96PP4 275 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 FAM111AQ96PZ2 611 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 TSSK1BQ9BXA7 367 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 TRIM55Q9BYV6 548 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 ZCWPW1Q9H0M4 648 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 GBA3Q9H227 469 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 SMOC2Q9H3U7 446 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 ECT2Q9H8V3 914 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 SLCO1B3Q9NPD5 702 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 PCDHB7Q9Y5E2 793 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 CHD9Q3L8U1 2897 aa13.13□□□□□ -0.31
DDX56-204ENST00000431640 WDR91A4D1P6 747 aa13.12□□□□□ -0.31
DDX56-204ENST00000431640 I6L893 689 aaPredicted RBP13.12□□□□□ -0.31
DDX56-204ENST00000431640 KCNK1O00180 336 aa13.12□□□□□ -0.31
DDX56-204ENST00000431640 C2CD2LO14523 706 aa13.12□□□□□ -0.31
DDX56-204ENST00000431640 TNFRSF10BO14763 440 aa13.12□□□□□ -0.31
DDX56-204ENST00000431640 SYN3O14994 580 aa13.12□□□□□ -0.31
DDX56-204ENST00000431640 BIRC5O15392 142 aa13.12□□□□□ -0.31
DDX56-204ENST00000431640 IRAK2O43187 625 aa13.12□□□□□ -0.31
DDX56-204ENST00000431640 BAIAP3O94812 1187 aa13.12□□□□□ -0.31
DDX56-204ENST00000431640 LINC00271P0C7V0 271 aa13.12□□□□□ -0.31
DDX56-204ENST00000431640 CSH1P0DML2 217 aa13.12□□□□□ -0.31
DDX56-204ENST00000431640 CSH2P0DML3 217 aa13.12□□□□□ -0.31
DDX56-204ENST00000431640 SLC2A3P11169 496 aa13.12□□□□□ -0.31
DDX56-204ENST00000431640 HNRNPH1P31943 449 aaKnown RBP13.12□□□□□ -0.31
DDX56-204ENST00000431640 MAGEA10P43363 369 aaPredicted RBP13.12□□□□□ -0.31
DDX56-204ENST00000431640 SERPINB4P48594 390 aa13.12□□□□□ -0.31
DDX56-204ENST00000431640 GRTP1Q5TC63 336 aa13.12□□□□□ -0.31
DDX56-204ENST00000431640 KYAT3Q6YP21 454 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms