RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 C5orf22Q49AR2 442 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 ALFQ53S48 1182 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 C6orf118Q5T5N4 469 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 B4GALNT4Q76KP1 1039 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 CHST9Q7L1S5 443 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 NLRP14Q86W24 1093 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 LRRC49Q8IUZ0 686 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 ARID3BQ8IVW6 561 aaPredicted RBP17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 BBS7Q8IWZ6 715 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 TDRD5Q8NAT2 981 aaKnown RBP17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 NETO2Q8NC67 525 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 HTR3CQ8WXA8 447 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 HDAC11Q96DB2 347 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 SNF8Q96H20 258 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 LGMNQ99538 433 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 GDF3Q9NR23 364 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 CCL26Q9Y258 94 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 SNX24Q9Y343 169 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 SLC9A3R1O14745 358 aaPredicted RBP17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 TBL1XO60907 577 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 TNFRSF8P28908 595 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 IRAK1P51617 712 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 RPS24P62847 133 aaKnown RBP17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 GPS1Q13098 491 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 USP4Q13107 963 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 CBX2Q14781 532 aaPredicted RBP17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 PRKD1Q15139 912 aaPredicted RBP17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 PARP15Q460N3 678 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 MPPE1Q53F39 396 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 DUPD1Q68J44 220 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 TIGD7Q6NT04 549 aaPredicted RBP17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 SYCE2Q6PIF2 218 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 C4orf22Q6V702 233 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 ARHGEF18Q6ZSZ5 1173 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 CCDC13Q8IYE1 715 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 UMODL1-AS1Q8N2C9 162 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 CPXM2Q8N436 756 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 CELF5Q8N6W0 485 aaKnown RBP17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 DDI1Q8WTU0 396 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 NSMCE1Q8WV22 266 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 CASKIN2Q8WXE0 1202 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 TMA16Q96EY4 203 aaKnown RBP17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 PRICKLE1Q96MT3 831 aaPredicted RBP17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 FAM161BQ96MY7 647 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 ADAM7Q9H2U9 754 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 SP110Q9HB58 689 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 PAK5Q9P286 719 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 TBC1D14Q9P2M4 693 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 RAB21Q9UL25 225 aa17.56■□□□□ 0.4
CCDC28B-202ENST00000421922 RASA4BC9J798 803 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 H0Y626 953 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 RASA4O43374 803 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 PRAMEF12O95522 483 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 RHOCP08134 193 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 MTHFRP42898 656 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 GDF10P55107 478 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 YBEYP58557 167 aaPredicted RBP17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 ZXDBP98169 803 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 ZNF33AQ06730 810 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 PPIDQ08752 370 aaKnown RBP17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 CDH18Q13634 790 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 POLD3Q15054 466 aaPredicted RBP17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 ZNF77Q15935 545 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 ANO4Q32M45 955 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 NPAS3Q8IXF0 933 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 CARNMT1Q8N4J0 409 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 ZSWIM3Q96MP5 696 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 SLC39A8Q9C0K1 460 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 GDE1Q9NZC3 331 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 EYSQ5T1H1 3165 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 ETS1P14921 441 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 TCF3P15923 654 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 WEE1P30291 646 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 ETFBP38117 255 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 RPL21P46778 160 aaKnown RBP17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 DRG2P55039 364 aaKnown RBP17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 P3H1Q32P28 736 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 PCGF5Q86SE9 256 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 ARHGAP12Q8IWW6 846 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 FAM217AQ8IXS0 508 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 LRRN4Q8WUT4 740 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 FGF13Q92913 245 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 SMARCD2Q92925 531 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 P2RY11Q96G91 374 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 FAM129AQ9BZQ8 928 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 NDFIP2Q9NV92 336 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 WHRNQ9P202 907 aa17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 MTRF1LQ9UGC7 380 aaKnown RBP17.55■□□□□ 0.4
CCDC28B-202ENST00000421922 NYNRINQ9P2P1 1898 aaKnown RBP17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 SPTBN5Q9NRC6 3674 aaKnown RBP17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 CCDC151A5D8V7 595 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 RNF103O00237 685 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 GREM1O60565 184 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 TBX10O75333 385 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 ZSCAN5DPP0CG00 497 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 VAV1P15498 845 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 ITIH2P19823 946 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 POU3F3P20264 500 aaPredicted RBP17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 CCNCP24863 283 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 CARSP49589 748 aaKnown RBP17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms