RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 FBXL22Q6P050 247 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 FOXR2Q6PJQ5 311 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.94□□□□□ -0.5
USP4-204ENST00000416417 USP30Q70CQ3 517 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 C14orf80Q86SX3 495 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 ATP6V0D2Q8N8Y2 350 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 PPP1R13BQ96KQ4 1090 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 IRX2Q9BZI1 471 aaPredicted RBP11.94□□□□□ -0.5
USP4-204ENST00000416417 SIX2Q9NPC8 291 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 LHX6Q9UPM6 363 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 PCDHGB2Q9Y5G2 931 aa11.94□□□□□ -0.5
USP4-204ENST00000416417 ITIH6Q6UXX5 1313 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 BNIP3LO60238 219 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 RTN2O75298 545 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 PON1P27169 355 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 MAT2AP31153 395 aaKnown RBP11.93□□□□□ -0.5
USP4-204ENST00000416417 CDK17Q00537 523 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 CXorf57Q6NSI4 855 aaKnown RBP11.93□□□□□ -0.5
USP4-204ENST00000416417 GBP6Q6ZN66 633 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 BEND5Q7L4P6 421 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 PROSER1Q86XN7 944 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 ZNF557Q8N988 423 aaPredicted RBP11.93□□□□□ -0.5
USP4-204ENST00000416417 OR2T34Q8NGX1 318 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 RPRD1AQ96P16 312 aaPredicted RBP11.93□□□□□ -0.5
USP4-204ENST00000416417 SLC2A13Q96QE2 648 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 CDC6Q99741 560 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 ACE2Q9BYF1 805 aaPredicted RBP11.93□□□□□ -0.5
USP4-204ENST00000416417 SIK2Q9H0K1 926 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 CAAP1Q9H8G2 361 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 OSGEPQ9NPF4 335 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 TMPRSS4Q9NRS4 437 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.93□□□□□ -0.54e-6■■■■□ 20.5
USP4-204ENST00000416417 KIAA1468Q9P260 1216 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 APEX2Q9UBZ4 518 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 RWDD2AQ9UIY3 292 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 SARDHQ9UL12 918 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 VANGL2Q9ULK5 521 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 NBEAQ8NFP9 2946 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 PLXNB3Q9ULL4 1909 aa11.93□□□□□ -0.5
USP4-204ENST00000416417 DSPP15924 2871 aaKnown RBP11.93□□□□□ -0.5
USP4-204ENST00000416417 TBC1D3DA0A087WVF3 549 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 TBC1D3IA0A087WXS9 549 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 TBC1D3EA0A087X179 549 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 TBC1D3KA0A087X1G2 549 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 TARSL2A2RTX5 802 aaKnown RBP11.92□□□□□ -0.5
USP4-204ENST00000416417 TBC1D3FA6NER0 549 aaPredicted RBP11.92□□□□□ -0.5
USP4-204ENST00000416417 LRRC72A6NJI9 287 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 TBC1D3LB9A6J9 549 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 VILLO15195 856 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 FGFR1OPO95684 399 aaKnown RBP11.92□□□□□ -0.5
USP4-204ENST00000416417 TBC1D3HP0C7X1 549 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 ABCB4P21439 1286 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 DRD3P35462 400 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 MTIF2P46199 727 aaKnown RBP11.92□□□□□ -0.5
USP4-204ENST00000416417 ADPRHP54922 357 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 RNASE9P60153 205 aaKnown RBP11.92□□□□□ -0.5
USP4-204ENST00000416417 RACK1P63244 317 aaKnown RBP11.92□□□□□ -0.5
USP4-204ENST00000416417 AUHQ13825 339 aaKnown RBP11.92□□□□□ -0.5
USP4-204ENST00000416417 SUZ12Q15022 739 aaKnown RBP11.92□□□□□ -0.5
USP4-204ENST00000416417 SHBQ15464 509 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 EXOC3L4Q17RC7 722 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 ACCSLQ4AC99 568 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 OTUD1Q5VV17 481 aaPredicted RBP11.92□□□□□ -0.5
USP4-204ENST00000416417 TBC1D3GQ6DHY5 549 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 TBC1D3CQ6IPX1 549 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 LRSAM1Q6UWE0 723 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 OLFML1Q6UWY5 402 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 DHRS13Q6UX07 377 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 ENOSF1Q7L5Y1 443 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 SLC47A2Q86VL8 602 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 TBC1D3Q8IZP1 549 aaPredicted RBP11.92□□□□□ -0.5
USP4-204ENST00000416417 FRS2Q8WU20 508 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 SHC3Q92529 594 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 TRIM62Q9BVG3 475 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 CCDC86Q9H6F5 360 aaKnown RBP11.92□□□□□ -0.5
USP4-204ENST00000416417 ANLNQ9NQW6 1124 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 ADAMTS1Q9UHI8 967 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 SLC12A6Q9UHW9 1150 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 DNAJC12Q9UKB3 198 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 SCML1Q9UN30 329 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 CA5BQ9Y2D0 317 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 RAXQ9Y2V3 346 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 HS3ST4Q9Y661 456 aa11.92□□□□□ -0.5
USP4-204ENST00000416417 A0A1B0GTQ1 180 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 A0A1W2PR77 199 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 FOXN3O00409 490 aaPredicted RBP11.91□□□□□ -0.5
USP4-204ENST00000416417 CNTN5O94779 1100 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 GOT1P17174 413 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 CD38P28907 300 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 CCR1P32246 355 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 CLCN1P35523 988 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 GRK6P43250 576 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 BNIP3Q12983 259 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 DNAJC3Q13217 504 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 ARID5BQ14865 1188 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 MEA1Q16626 185 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 PTPN20Q4JDL3 420 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 C2CD6Q53TS8 623 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 RABGAP1LQ5R372 815 aa11.91□□□□□ -0.5
USP4-204ENST00000416417 C11orf57Q6ZUT1 292 aaPredicted RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms