RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 PBX1P40424 430 aa15.25■□□□□ 0.03
LIMS4-201ENST00000413601 PTPN9P43378 593 aa15.25■□□□□ 0.03
LIMS4-201ENST00000413601 STK19P49842 368 aaPredicted RBP15.25■□□□□ 0.03
LIMS4-201ENST00000413601 PLK1P53350 603 aa15.25■□□□□ 0.03
LIMS4-201ENST00000413601 CDH4P55283 916 aa15.25■□□□□ 0.03
LIMS4-201ENST00000413601 OXCT1P55809 520 aa15.25■□□□□ 0.03
LIMS4-201ENST00000413601 AASDHQ4L235 1098 aaPredicted RBP15.25■□□□□ 0.03
LIMS4-201ENST00000413601 SPDYCQ5MJ68 293 aa15.25■□□□□ 0.03
LIMS4-201ENST00000413601 RNF219Q5W0B1 726 aaPredicted RBP15.25■□□□□ 0.03
LIMS4-201ENST00000413601 DNAJC24Q6P3W2 148 aa15.25■□□□□ 0.03
LIMS4-201ENST00000413601 ZNF571Q7Z3V5 609 aaPredicted RBP15.25■□□□□ 0.03
LIMS4-201ENST00000413601 MCOLN2Q8IZK6 566 aa15.25■□□□□ 0.03
LIMS4-201ENST00000413601 ALG14Q96F25 216 aa15.25■□□□□ 0.03
LIMS4-201ENST00000413601 HAPLN3Q96S86 360 aa15.25■□□□□ 0.03
LIMS4-201ENST00000413601 FEM1AQ9BSK4 669 aa15.25■□□□□ 0.03
LIMS4-201ENST00000413601 EDEM3Q9BZQ6 932 aa15.25■□□□□ 0.03
LIMS4-201ENST00000413601 TMEM74BQ9NUR3 256 aa15.25■□□□□ 0.03
LIMS4-201ENST00000413601 MPP6Q9NZW5 540 aa15.25■□□□□ 0.03
LIMS4-201ENST00000413601 CDV3Q9UKY7 258 aaKnown RBP15.25■□□□□ 0.03
LIMS4-201ENST00000413601 CHD5Q8TDI0 1954 aa15.25■□□□□ 0.03
LIMS4-201ENST00000413601 ATXN2Q99700 1313 aaKnown RBP15.24■□□□□ 0.03
LIMS4-201ENST00000413601 DRGXA6NNA5 263 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 PATE3B3GLJ2 98 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 E9PAM4 449 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 FOXD2O60548 495 aaPredicted RBP15.24■□□□□ 0.03
LIMS4-201ENST00000413601 SIN3BO75182 1162 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 SKILP12757 684 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 GPD1P21695 349 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 ITPKAP23677 461 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 RRM1P23921 792 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 CD6P30203 668 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 PRKCIP41743 596 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 RPS14P62263 151 aaKnown RBP15.24■□□□□ 0.03
LIMS4-201ENST00000413601 RPL7AP62424 266 aaKnown RBP15.24■□□□□ 0.03
LIMS4-201ENST00000413601 ZNF33AQ06730 810 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 KLHL30Q0D2K2 578 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 HNRNPA1L2Q32P51 320 aaKnown RBP15.24■□□□□ 0.03
LIMS4-201ENST00000413601 FIGNQ5HY92 759 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 ARTNQ5T4W7 220 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 LYSMD4Q5XG99 296 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 STRADAQ7RTN6 431 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 FAM124AQ86V42 546 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 DNAAF5Q86Y56 855 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 SLC41A1Q8IVJ1 513 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 KDM1BQ8NB78 822 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 FAM172AQ8WUF8 416 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 CENPIQ92674 756 aaPredicted RBP15.24■□□□□ 0.03
LIMS4-201ENST00000413601 TOE1Q96GM8 510 aaKnown RBP15.24■□□□□ 0.03
LIMS4-201ENST00000413601 NUP58Q9BVL2 599 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 DLL3Q9NYJ7 618 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 WSB2Q9NYS7 404 aaPredicted RBP15.24■□□□□ 0.03
LIMS4-201ENST00000413601 IFNKQ9P0W0 207 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 TBC1D30Q9Y2I9 924 aa15.24■□□□□ 0.03
LIMS4-201ENST00000413601 ITIH6Q6UXX5 1313 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 IGLV3-10A0A075B6K4 115 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 RHOCP08134 193 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 OXTRP30559 389 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 ADRA1BP35368 520 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 HDAC4P56524 1084 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 SULT2A1Q06520 285 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 PUM1Q14671 1186 aaKnown RBP eCLIP15.23■□□□□ 0.03
LIMS4-201ENST00000413601 ARID5BQ14865 1188 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 ARL13BQ3SXY8 428 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 PPP1R15BQ5SWA1 713 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 C9orf64Q5T6V5 341 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 ACBD5Q5T8D3 534 aaPredicted RBP15.23■□□□□ 0.03
LIMS4-201ENST00000413601 TFAP2DQ7Z6R9 452 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 SYT12Q8IV01 421 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 NETO1Q8TDF5 533 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 CPLX3Q8WVH0 158 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 HSPA12BQ96MM6 686 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 MCEEQ96PE7 176 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 PPP1R9BQ96SB3 815 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 GPR174Q9BXC1 333 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 MAGEB5Q9BZ81 275 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 MUC3BQ9H195 1237 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 FBRSQ9HAH7 460 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 OR12D3Q9UGF7 316 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 VPS28Q9UK41 221 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 PILRBQ9UKJ0 227 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 OR51B4Q9Y5P0 310 aa15.23■□□□□ 0.03
LIMS4-201ENST00000413601 EDDM13A0A1B0GTR0 161 aa15.22■□□□□ 0.03
LIMS4-201ENST00000413601 A0A1W2PQJ5 194 aa15.22■□□□□ 0.03
LIMS4-201ENST00000413601 ANKRD62A6NC57 917 aa15.22■□□□□ 0.03
LIMS4-201ENST00000413601 DDX3XO00571 662 aaKnown RBP eCLIP15.22■□□□□ 0.03
LIMS4-201ENST00000413601 KHNYNO15037 678 aaKnown RBP15.22■□□□□ 0.03
LIMS4-201ENST00000413601 CCP110O43303 1012 aa15.22■□□□□ 0.03
LIMS4-201ENST00000413601 ATMINO43313 823 aaPredicted RBP15.22■□□□□ 0.03
LIMS4-201ENST00000413601 IGLV3-19P01714 112 aa15.22■□□□□ 0.03
LIMS4-201ENST00000413601 SDHBP21912 280 aa15.22■□□□□ 0.03
LIMS4-201ENST00000413601 NNMTP40261 264 aa15.22■□□□□ 0.03
LIMS4-201ENST00000413601 ZNF143P52747 638 aaPredicted RBP15.22■□□□□ 0.03
LIMS4-201ENST00000413601 ZNF776Q68DI1 518 aaPredicted RBP15.22■□□□□ 0.03
LIMS4-201ENST00000413601 PPP1R2P3Q6NXS1 205 aa15.22■□□□□ 0.03
LIMS4-201ENST00000413601 CCDC185Q8N715 623 aa15.22■□□□□ 0.03
LIMS4-201ENST00000413601 ZNF419Q96HQ0 510 aaPredicted RBP15.22■□□□□ 0.03
LIMS4-201ENST00000413601 VCPIP1Q96JH7 1222 aa15.22■□□□□ 0.03
LIMS4-201ENST00000413601 ZYG11BQ9C0D3 744 aa15.22■□□□□ 0.03
LIMS4-201ENST00000413601 XPO4Q9C0E2 1151 aaKnown RBP15.22■□□□□ 0.03
LIMS4-201ENST00000413601 RSPH9Q9H1X1 276 aaPredicted RBP15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms