RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 PIN4Q9Y237 131 aaKnown RBP12.19□□□□□ -0.46
HMGB1-206ENST00000405805 EFR3BQ9Y2G0 817 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 MYOCOSA0A1B0GUC4 107 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 SPDYE16A6NNV3 312 aaPredicted RBP12.19□□□□□ -0.46
HMGB1-206ENST00000405805 STX1BP61266 288 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 VGLL4Q14135 290 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 TRIM25Q14258 630 aaKnown RBP12.19□□□□□ -0.46
HMGB1-206ENST00000405805 PPP1R26Q5T8A7 1209 aaPredicted RBP12.19□□□□□ -0.46
HMGB1-206ENST00000405805 AFAP1L2Q8N4X5 818 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 HTR3CQ8WXA8 447 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 SLC10A4Q96EP9 437 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 CEP44Q9C0F1 390 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 HAPLN2Q9GZV7 340 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 KRT82Q9NSB4 513 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 AFG3L2Q9Y4W6 797 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 SMCHD1A6NHR9 2005 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 PRRC2BQ5JSZ5 2229 aaKnown RBP12.19□□□□□ -0.46
HMGB1-206ENST00000405805 CLEC4CQ8WTT0 213 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 FBXL18Q96ME1 805 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 APBA2Q99767 749 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 NTPCRQ9BSD7 190 aaKnown RBP12.19□□□□□ -0.46
HMGB1-206ENST00000405805 GOLGA8CPA6NN73 597 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 HCRTO43612 131 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 DEAF1O75398 565 aaPredicted RBP12.19□□□□□ -0.46
HMGB1-206ENST00000405805 WFS1O76024 890 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 AMHP03971 560 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 SERPINE1P05121 402 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 BPGMP07738 259 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 NCAM1P13591 858 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 GCAP28676 217 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 ZNF143P52747 638 aaPredicted RBP12.19□□□□□ -0.46
HMGB1-206ENST00000405805 AQP4P55087 323 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 ADAM17P78536 824 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 ANKRD23Q86SG2 305 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 SATL1Q86VE3 508 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 C1orf127Q8N9H9 656 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 NAT14Q8WUY8 206 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 ELMO2Q96JJ3 720 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 ATAD3AQ9NVI7 634 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 NUDT5Q9UKK9 219 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 LRRC42Q9Y546 428 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 CDY2AQ9Y6F7 541 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 CDY1Q9Y6F8 540 aa12.19□□□□□ -0.46
HMGB1-206ENST00000405805 ATP6AP2A0A1C7CYW4 349 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 WBP4O75554 376 aaKnown RBP12.18□□□□□ -0.46
HMGB1-206ENST00000405805 ATP6AP2O75787 350 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 XRRA1Q6P2D8 792 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 GPR141Q7Z602 305 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 DHDDSQ86SQ9 333 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 TDRPQ86YL5 185 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 DDIASQ8IXT1 998 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 BEST2Q8NFU1 509 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 EBNA1BP2Q99848 306 aaKnown RBP12.18□□□□□ -0.46
HMGB1-206ENST00000405805 STRA6Q9BX79 667 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 GPR25O00155 361 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 ZNF24P17028 368 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 TNFAIP2Q03169 654 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 PTP4A2Q12974 167 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 CDC16Q13042 620 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 DGKDQ16760 1214 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 ZNF280DQ6N043 979 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 PMF1Q6P1K2 205 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 DEFB106AQ8N104 65 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 SPATC1LQ9H0A9 340 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 NRDE2Q9H7Z3 1164 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 PCDH18Q9HCL0 1135 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 TMPRSS4Q9NRS4 437 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 DDIT4Q9NX09 232 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 CCDC167Q9P0B6 97 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 GPC6Q9Y625 555 aaPredicted RBP12.18□□□□□ -0.46
HMGB1-206ENST00000405805 NOTOA8MTQ0 251 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 TSC22D2O75157 780 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 FKBP6O75344 327 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 TM7SF2O76062 418 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 PIGNO95427 931 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 DLDP09622 509 aaKnown RBP12.18□□□□□ -0.46
HMGB1-206ENST00000405805 PLOD1Q02809 727 aaPredicted RBP12.18□□□□□ -0.46
HMGB1-206ENST00000405805 TTLL4Q14679 1199 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 PDK3Q15120 406 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 NOMO1Q15155 1222 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 ZPBP2Q6X784 338 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 CATSPERGQ6ZRH7 1159 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 WDTC1Q8N5D0 677 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 SLC2A14Q8TDB8 520 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 PANX3Q96QZ0 392 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 EFHD1Q9BUP0 239 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 GCOM2Q9BZD3 368 aaPredicted RBP12.18□□□□□ -0.46
HMGB1-206ENST00000405805 PRDM12Q9H4Q4 367 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 TMEM216Q9P0N5 145 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 MFHAS1Q9Y4C4 1052 aa12.18□□□□□ -0.46
HMGB1-206ENST00000405805 DDX60LQ5H9U9 1706 aaKnown RBP12.18□□□□□ -0.46
HMGB1-206ENST00000405805 ECM29Q5VYK3 1845 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 ACKR2O00590 384 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 PLA2G6O60733 806 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 PDAP1Q13442 181 aaKnown RBP12.17□□□□□ -0.46
HMGB1-206ENST00000405805 ANKLE1Q8NAG6 615 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 PCDH19Q8TAB3 1148 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 ZNF398Q8TD17 642 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 CYTH4Q9UIA0 394 aa12.17□□□□□ -0.46
HMGB1-206ENST00000405805 STAP1Q9ULZ2 295 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms