RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 WASH4PA8MWX3 477 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 HACD1B0YJ81 288 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 SGK1O00141 431 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 DFFAO00273 331 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 SCAMP3O14828 347 aaKnown RBP14.59□□□□□ -0.07
SKA1-202ENST00000398452 LIASO43766 372 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 RAMP2O60895 175 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 TBL1XO60907 577 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 PRAMEF12O95522 483 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 NUDT7P0C024 238 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 SLC6A4P31645 630 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 LTBRP36941 435 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 VCPP55072 806 aaKnown RBP14.59□□□□□ -0.07
SKA1-202ENST00000398452 OXCT1P55809 520 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 DR1Q01658 176 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 ADCY2Q08462 1091 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 CDH18Q13634 790 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 NOMO1Q15155 1222 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 ZNF77Q15935 545 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 CYP1B1Q16678 543 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 FAM78AQ5JUQ0 283 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 DRICH1Q6PGQ1 229 aaPredicted RBP14.59□□□□□ -0.07
SKA1-202ENST00000398452 NPNTQ6UXI9 565 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 MTSS1LQ765P7 747 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 ZC3H18Q86VM9 953 aaKnown RBP14.59□□□□□ -0.07
SKA1-202ENST00000398452 LRRC49Q8IUZ0 686 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 CFAP52Q8N1V2 620 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 ATPAF2Q8N5M1 289 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 CCDC89Q8N998 374 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 SMRP1Q8NCR6 262 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 CCHCR1Q8TD31 782 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 TFB1MQ8WVM0 346 aaKnown RBP14.59□□□□□ -0.07
SKA1-202ENST00000398452 ATG4AQ8WYN0 398 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 IGSF8Q969P0 613 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 MSLNLQ96KJ4 702 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 HERPUD2Q9BSE4 406 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 DUS2Q9NX74 493 aaKnown RBP14.59□□□□□ -0.07
SKA1-202ENST00000398452 FAM50BQ9Y247 325 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 DRG1Q9Y295 367 aaKnown RBP14.59□□□□□ -0.07
SKA1-202ENST00000398452 UTP11Q9Y3A2 253 aaKnown RBP14.59□□□□□ -0.07
SKA1-202ENST00000398452 FAM187AA6NFU0 413 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 TRDMT1O14717 391 aaKnown RBP14.58□□□□□ -0.08
SKA1-202ENST00000398452 MTSS1O43312 755 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 MFSD11O43934 449 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 RHOCP08134 193 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 PECAM1P16284 738 aaPredicted RBP14.58□□□□□ -0.08
SKA1-202ENST00000398452 STIP1P31948 543 aaKnown RBP14.58□□□□□ -0.08
SKA1-202ENST00000398452 NDST2P52849 883 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 YBEYP58557 167 aaPredicted RBP14.58□□□□□ -0.08
SKA1-202ENST00000398452 GBE1Q04446 702 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 AP1B1Q10567 949 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 NR1H3Q13133 447 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 SMAD4Q13485 552 aaKnown RBP14.58□□□□□ -0.08
SKA1-202ENST00000398452 COL19A1Q14993 1142 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 SIX1Q15475 284 aaPredicted RBP14.58□□□□□ -0.08
SKA1-202ENST00000398452 ANO4Q32M45 955 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 PUS10Q3MIT2 529 aaKnown RBP14.58□□□□□ -0.08
SKA1-202ENST00000398452 C5orf22Q49AR2 442 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 HEATR6Q6AI08 1181 aaKnown RBP14.58□□□□□ -0.08
SKA1-202ENST00000398452 TIGD7Q6NT04 549 aaPredicted RBP14.58□□□□□ -0.08
SKA1-202ENST00000398452 TPGS1Q6ZTW0 290 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 SYDE1Q6ZW31 735 aaPredicted RBP14.58□□□□□ -0.08
SKA1-202ENST00000398452 MFN1Q8IWA4 741 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 CARNMT1Q8N4J0 409 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 NKD2Q969F2 451 aaPredicted RBP14.58□□□□□ -0.08
SKA1-202ENST00000398452 WBP2Q969T9 261 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 RNF166Q96A37 237 aaPredicted RBP14.58□□□□□ -0.08
SKA1-202ENST00000398452 FAM118BQ9BPY3 351 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 RAB17Q9H0T7 212 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 ETNK2Q9NVF9 386 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 HAUS2Q9NVX0 235 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 DTLQ9NZJ0 730 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 SAE1Q9UBE0 346 aaPredicted RBP14.58□□□□□ -0.08
SKA1-202ENST00000398452 AMACRQ9UHK6 382 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 DNPEPQ9ULA0 475 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 HPCAL4Q9UM19 191 aa14.58□□□□□ -0.08
SKA1-202ENST00000398452 R3HDM2Q9Y2K5 976 aaKnown RBP14.58□□□□□ -0.08
SKA1-202ENST00000398452 USP15Q9Y4E8 981 aaPredicted RBP14.58□□□□□ -0.08
SKA1-202ENST00000398452 OBSL1O75147 1896 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 HEPACAM2A8MVW5 462 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 NRG2O14511 850 aaPredicted RBP14.57□□□□□ -0.08
SKA1-202ENST00000398452 NDC80O14777 642 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 CNTN5O94779 1100 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 NFATC1O95644 943 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 ADH1CP00326 375 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 IFNB1P01574 187 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 ITGAVP06756 1048 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 MCM3P25205 808 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 VIPR2P41587 438 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 RPS24P62847 133 aaKnown RBP14.57□□□□□ -0.08
SKA1-202ENST00000398452 ZXDBP98169 803 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 POLD3Q15054 466 aaPredicted RBP14.57□□□□□ -0.08
SKA1-202ENST00000398452 PDGFRLQ15198 375 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 PARP15Q460N3 678 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 ALFQ53S48 1182 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 SLC45A4Q5BKX6 768 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 MPP7Q5T2T1 576 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 SETD3Q86TU7 594 aaPredicted RBP14.57□□□□□ -0.08
SKA1-202ENST00000398452 FAM217AQ8IXS0 508 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 UMODL1-AS1Q8N2C9 162 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms