RNA–Protein interactions for RNA: ENST00000397442.5

CPNE1-203, Transcript of copine 1, humanhuman

TSL 5 BASIC

Gene CPNE1, Length 1,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-203ENST00000397442 ARID3BQ8IVW6 561 aaPredicted RBP28.22■■■□□ 2.11
CPNE1-203ENST00000397442 GSPT2Q8IYD1 628 aaKnown RBP28.22■■■□□ 2.11
CPNE1-203ENST00000397442 CCNYQ8ND76 341 aa28.22■■■□□ 2.11
CPNE1-203ENST00000397442 HTR3CQ8WXA8 447 aa28.22■■■□□ 2.11
CPNE1-203ENST00000397442 IFT81Q8WYA0 676 aa28.22■■■□□ 2.11
CPNE1-203ENST00000397442 P2RY11Q96G91 374 aa28.22■■■□□ 2.11
CPNE1-203ENST00000397442 RETREG1Q9H6L5 497 aa28.22■■■□□ 2.11
CPNE1-203ENST00000397442 FAM114A2Q9NRY5 505 aa28.22■■■□□ 2.11
CPNE1-203ENST00000397442 HOXB8P17481 243 aaPredicted RBP28.21■■■□□ 2.11
CPNE1-203ENST00000397442 FSHRP23945 695 aa28.21■■■□□ 2.11
CPNE1-203ENST00000397442 RPL22P35268 128 aaKnown RBP28.21■■■□□ 2.11
CPNE1-203ENST00000397442 MAPKAPK2P49137 400 aa28.21■■■□□ 2.11
CPNE1-203ENST00000397442 NDST2P52849 883 aa28.21■■■□□ 2.11
CPNE1-203ENST00000397442 DLX2Q07687 328 aaPredicted RBP28.21■■■□□ 2.11
CPNE1-203ENST00000397442 AP1B1Q10567 949 aa28.21■■■□□ 2.11
CPNE1-203ENST00000397442 CUL1Q13616 776 aa28.21■■■□□ 2.11
CPNE1-203ENST00000397442 ZNF77Q15935 545 aa28.21■■■□□ 2.11
CPNE1-203ENST00000397442 FBXO38Q6PIJ6 1188 aa28.21■■■□□ 2.11
CPNE1-203ENST00000397442 NPAS3Q8IXF0 933 aa28.21■■■□□ 2.11
CPNE1-203ENST00000397442 DEPDC1BQ8WUY9 529 aa28.21■■■□□ 2.11
CPNE1-203ENST00000397442 BRD8Q9H0E9 1235 aa28.21■■■□□ 2.11
CPNE1-203ENST00000397442 DONSONQ9NYP3 566 aa28.21■■■□□ 2.11
CPNE1-203ENST00000397442 TBX10O75333 385 aa28.2■■■□□ 2.11
CPNE1-203ENST00000397442 TCF3P15923 654 aa28.2■■■□□ 2.11
CPNE1-203ENST00000397442 WEE1P30291 646 aa28.2■■■□□ 2.11
CPNE1-203ENST00000397442 CDH4P55283 916 aa28.2■■■□□ 2.11
CPNE1-203ENST00000397442 USP4Q13107 963 aa28.2■■■□□ 2.11
CPNE1-203ENST00000397442 BRD3Q15059 726 aa28.2■■■□□ 2.11
CPNE1-203ENST00000397442 HEATR6Q6AI08 1181 aaKnown RBP28.2■■■□□ 2.11
CPNE1-203ENST00000397442 ARHGAP36Q6ZRI8 547 aa28.2■■■□□ 2.11
CPNE1-203ENST00000397442 CPXM2Q8N436 756 aa28.2■■■□□ 2.11
CPNE1-203ENST00000397442 EIF1ADQ8N9N8 165 aaKnown RBP28.2■■■□□ 2.11
CPNE1-203ENST00000397442 ZSCAN18Q8TBC5 510 aaPredicted RBP28.2■■■□□ 2.11
CPNE1-203ENST00000397442 CCHCR1Q8TD31 782 aa28.2■■■□□ 2.11
CPNE1-203ENST00000397442 S1PR5Q9H228 398 aa28.2■■■□□ 2.11
CPNE1-203ENST00000397442 NEUROG2Q9H2A3 272 aa28.2■■■□□ 2.11
CPNE1-203ENST00000397442 NFU1Q9UMS0 254 aa28.2■■■□□ 2.11
CPNE1-203ENST00000397442 CHD5Q8TDI0 1954 aa28.2■■■□□ 2.11
CPNE1-203ENST00000397442 CCDC151A5D8V7 595 aa28.19■■■□□ 2.1
CPNE1-203ENST00000397442 DFFAO00273 331 aa28.19■■■□□ 2.1
CPNE1-203ENST00000397442 OR1E1P30953 314 aa28.19■■■□□ 2.1
CPNE1-203ENST00000397442 ADCY8P40145 1251 aa28.19■■■□□ 2.1
CPNE1-203ENST00000397442 ZDHHC24Q6UX98 284 aa28.19■■■□□ 2.1
CPNE1-203ENST00000397442 CHST9Q7L1S5 443 aa28.19■■■□□ 2.1
CPNE1-203ENST00000397442 TSGA13Q96PP4 275 aa28.19■■■□□ 2.1
CPNE1-203ENST00000397442 ADAM7Q9H2U9 754 aa28.19■■■□□ 2.1
CPNE1-203ENST00000397442 ZDHHC18Q9NUE0 388 aa28.19■■■□□ 2.1
CPNE1-203ENST00000397442 SHROOM3Q8TF72 1996 aa28.19■■■□□ 2.1
CPNE1-203ENST00000397442 CLDN11O75508 207 aa28.19■■■□□ 2.1
CPNE1-203ENST00000397442 SEC31AO94979 1220 aaKnown RBP28.19■■■□□ 2.1
CPNE1-203ENST00000397442 GPS1Q13098 491 aa28.19■■■□□ 2.1
CPNE1-203ENST00000397442 COL19A1Q14993 1142 aa28.19■■■□□ 2.1
CPNE1-203ENST00000397442 TTC39BQ5VTQ0 682 aaPredicted RBP28.19■■■□□ 2.1
CPNE1-203ENST00000397442 FGF13Q92913 245 aa28.19■■■□□ 2.1
CPNE1-203ENST00000397442 SNF8Q96H20 258 aa28.19■■■□□ 2.1
CPNE1-203ENST00000397442 WHRNQ9P202 907 aa28.19■■■□□ 2.1
CPNE1-203ENST00000397442 A0A1B0GVM2 712 aa28.18■■■□□ 2.1
CPNE1-203ENST00000397442 TCAF2A6NFQ2 919 aa28.18■■■□□ 2.1
CPNE1-203ENST00000397442 C5orf60A6NFR6 353 aa28.18■■■□□ 2.1
CPNE1-203ENST00000397442 MAFKO60675 156 aa28.18■■■□□ 2.1
CPNE1-203ENST00000397442 PAPOLAP51003 745 aaKnown RBP28.18■■■□□ 2.1
CPNE1-203ENST00000397442 ZNF33AQ06730 810 aa28.18■■■□□ 2.1
CPNE1-203ENST00000397442 WASHC5Q12768 1159 aa28.18■■■□□ 2.1
CPNE1-203ENST00000397442 P3H1Q32P28 736 aa28.18■■■□□ 2.1
CPNE1-203ENST00000397442 OR52K2Q8NGK3 314 aa28.18■■■□□ 2.1
CPNE1-203ENST00000397442 HMCESQ96FZ2 354 aa28.18■■■□□ 2.1
CPNE1-203ENST00000397442 RASA4BC9J798 803 aa28.17■■■□□ 2.1
CPNE1-203ENST00000397442 RASA4O43374 803 aa28.17■■■□□ 2.1
CPNE1-203ENST00000397442 GCATO75600 419 aa28.17■■■□□ 2.1
CPNE1-203ENST00000397442 CHKAP35790 457 aa28.17■■■□□ 2.1
CPNE1-203ENST00000397442 LTBRP36941 435 aa28.17■■■□□ 2.1
CPNE1-203ENST00000397442 ATPAF2Q8N5M1 289 aa28.17■■■□□ 2.1
CPNE1-203ENST00000397442 HJURPQ8NCD3 748 aaPredicted RBP28.17■■■□□ 2.1
CPNE1-203ENST00000397442 CCDC110Q8TBZ0 833 aa28.17■■■□□ 2.1
CPNE1-203ENST00000397442 TMA16Q96EY4 203 aaKnown RBP28.17■■■□□ 2.1
CPNE1-203ENST00000397442 KCNK1O00180 336 aa28.16■■■□□ 2.1
CPNE1-203ENST00000397442 CLCN6P51797 869 aa28.16■■■□□ 2.1
CPNE1-203ENST00000397442 LRRC49Q8IUZ0 686 aa28.16■■■□□ 2.1
CPNE1-203ENST00000397442 CCDC13Q8IYE1 715 aa28.16■■■□□ 2.1
CPNE1-203ENST00000397442 TDRD5Q8NAT2 981 aaKnown RBP28.16■■■□□ 2.1
CPNE1-203ENST00000397442 ART4Q93070 314 aa28.16■■■□□ 2.1
CPNE1-203ENST00000397442 RSPRY1Q96DX4 576 aa28.16■■■□□ 2.1
CPNE1-203ENST00000397442 LRRC3BQ96PB8 259 aa28.16■■■□□ 2.1
CPNE1-203ENST00000397442 CLDND1Q9NY35 253 aa28.16■■■□□ 2.1
CPNE1-203ENST00000397442 TBC1D30Q9Y2I9 924 aa28.16■■■□□ 2.1
CPNE1-203ENST00000397442 RNF103O00237 685 aa28.16■■■□□ 2.1
CPNE1-203ENST00000397442 RAMP2O60895 175 aa28.16■■■□□ 2.1
CPNE1-203ENST00000397442 TBL1XO60907 577 aa28.16■■■□□ 2.1
CPNE1-203ENST00000397442 ITIH2P19823 946 aa28.16■■■□□ 2.1
CPNE1-203ENST00000397442 CCNCP24863 283 aa28.16■■■□□ 2.1
CPNE1-203ENST00000397442 YBEYP58557 167 aaPredicted RBP28.16■■■□□ 2.1
CPNE1-203ENST00000397442 HLTFQ14527 1009 aaKnown RBP eCLIP28.16■■■□□ 2.15e-8■■□□□ 14.2
CPNE1-203ENST00000397442 PARP15Q460N3 678 aa28.16■■■□□ 2.1
CPNE1-203ENST00000397442 FAM78AQ5JUQ0 283 aa28.16■■■□□ 2.1
CPNE1-203ENST00000397442 GET4Q7L5D6 327 aaPredicted RBP28.16■■■□□ 2.1
CPNE1-203ENST00000397442 FBXO25Q8TCJ0 367 aa28.16■■■□□ 2.1
CPNE1-203ENST00000397442 AENQ8WTP8 325 aaKnown RBP28.16■■■□□ 2.1
CPNE1-203ENST00000397442 HNRNPLLQ8WVV9 542 aaKnown RBP28.16■■■□□ 2.1
CPNE1-203ENST00000397442 A0A0A0MRY4 1105 aa28.15■■■□□ 2.1
CPNE1-203ENST00000397442 DNALI1O14645 258 aaPredicted RBP28.15■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms