RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 LMAN2LQ9H0V9 348 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 RBM12Q9NTZ6 932 aaKnown RBP7.32□□□□□ -1.24
UPF2-203ENST00000397053 RPTORQ8N122 1335 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 AP3D1O14617 1153 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 SNPHO15079 494 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 ADCY6O43306 1168 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 SGTAO43765 313 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 CXCL14O95715 111 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 NTRK1P04629 796 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 FCGR1AP12314 374 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 HOXB8P17481 243 aaPredicted RBP7.32□□□□□ -1.24
UPF2-203ENST00000397053 DGKAP23743 735 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 CNTFP26441 200 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 PSMB9P28065 219 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 RPA3P35244 121 aaPredicted RBP7.32□□□□□ -1.24
UPF2-203ENST00000397053 MMP13P45452 471 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 RPL21P46778 160 aaKnown RBP7.32□□□□□ -1.24
UPF2-203ENST00000397053 SCNN1GP51170 649 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 RGS1Q08116 209 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 RABL6Q3YEC7 729 aaPredicted RBP7.32□□□□□ -1.24
UPF2-203ENST00000397053 ERMARDQ5T6L9 678 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 PCNX4Q63HM2 1172 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 TMEM26Q6ZUK4 368 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 OR52L1Q8NGH7 329 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 ACTL9Q8TC94 416 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 TRAPPC12Q8WVT3 735 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 METTL21AQ8WXB1 218 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 DNAJC9Q8WXX5 260 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 RUBCNQ92622 972 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 AKT1S1Q96B36 256 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 FRMD6Q96NE9 622 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 CCT8L2Q96SF2 557 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 FTHL17Q9BXU8 183 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 FAM126AQ9BYI3 521 aaPredicted RBP7.32□□□□□ -1.24
UPF2-203ENST00000397053 IRX2Q9BZI1 471 aaPredicted RBP7.32□□□□□ -1.24
UPF2-203ENST00000397053 ZCCHC17Q9NP64 241 aaKnown RBP7.32□□□□□ -1.24
UPF2-203ENST00000397053 ATAD3AQ9NVI7 634 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 PCDHGB3Q9Y5G1 929 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 KDM5CP41229 1560 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 SAMD9Q5K651 1589 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 A0A1B0GTH6 734 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 MYL12BO14950 172 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 KLHL41O60662 606 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 ERAL1O75616 437 aaKnown RBP7.32□□□□□ -1.24
UPF2-203ENST00000397053 GLUD1P00367 558 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 PLEKP08567 350 aaPredicted RBP7.32□□□□□ -1.24
UPF2-203ENST00000397053 DAB2IPQ5VWQ8 1189 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 RGMBQ6NW40 437 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 PRMT9Q6P2P2 845 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 KIAA0408Q6ZU52 694 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 USP49Q70CQ1 688 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 SV2AQ7L0J3 742 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 PEX5LQ8IYB4 626 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 DEFB106AQ8N104 65 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.32□□□□□ -1.24
UPF2-203ENST00000397053 KCTD14Q9BQ13 255 aaPredicted RBP7.32□□□□□ -1.24
UPF2-203ENST00000397053 TMEM120AQ9BXJ8 343 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 ASB8Q9H765 288 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 MID1IP1Q9NPA3 183 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 CMTM6Q9NX76 183 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 TRHDEQ9UKU6 1024 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 GAKO14976 1311 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 MROH7Q68CQ1 1323 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 TRIM43BA6NCK2 446 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 H0Y858 1186 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 TSC22D2O75157 780 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 TOP3BO95985 862 aaKnown RBP7.32□□□□□ -1.24
UPF2-203ENST00000397053 IL6P05231 212 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 SREBF1P36956 1147 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 POLD2P49005 469 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 FXR1P51114 621 aaKnown RBP eCLIP7.32□□□□□ -1.24
UPF2-203ENST00000397053 SMAD3P84022 425 aaKnown RBP7.32□□□□□ -1.24
UPF2-203ENST00000397053 ITGADQ13349 1161 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 ZNF57Q68EA5 555 aaPredicted RBP7.32□□□□□ -1.24
UPF2-203ENST00000397053 PMF1Q6P1K2 205 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 ZBTB49Q6ZSB9 765 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 FAM220AQ7Z4H9 259 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 HIST2H2ABQ8IUE6 130 aaPredicted RBP7.32□□□□□ -1.24
UPF2-203ENST00000397053 TMEM86AQ8N2M4 240 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 SELENOMQ8WWX9 145 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 IL17RAQ96F46 866 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 C5orf34Q96MH7 638 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 POP1Q99575 1024 aaKnown RBP7.32□□□□□ -1.24
UPF2-203ENST00000397053 KLC4Q9NSK0 619 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 MRPL42Q9Y6G3 142 aaKnown RBP7.32□□□□□ -1.24
UPF2-203ENST00000397053 ACKR2O00590 384 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 ANXA6P08133 673 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 RXRGP48443 463 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 AP5B1Q2VPB7 878 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 INTS11Q5TA45 600 aaKnown RBP7.31□□□□□ -1.24
UPF2-203ENST00000397053 MOXD1Q6UVY6 613 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 RIPOR1Q6ZS17 1223 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 STOX1Q6ZVD7 989 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 CLCC1Q96S66 551 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 TMEM121Q9BTD3 319 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 MLPHQ9BV36 600 aaPredicted RBP7.31□□□□□ -1.24
UPF2-203ENST00000397053 KIAA1683Q9H0B3 1180 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 ATP13A3Q9H7F0 1226 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 POLR1BQ9H9Y6 1135 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 HEY2Q9UBP5 337 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms