RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 CMC1Q7Z7K0 106 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 NUDCD3Q8IVD9 361 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 NUP93Q8N1F7 819 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 SLC25A41Q8N5S1 370 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 PNPLA1Q8N8W4 532 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 MZB1Q8WU39 189 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 KLHL29Q96CT2 875 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 APOPT1Q96IL0 206 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 UROC1Q96N76 676 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 LRRC37BQ96QE4 947 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 DHRS4Q9BTZ2 278 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 SLC39A8Q9C0K1 460 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 UNC93B1Q9H1C4 597 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 ACSS2Q9NR19 701 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 ADAM28Q9UKQ2 775 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 PCDHB8Q9UN66 801 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 PRRC2BQ5JSZ5 2229 aaKnown RBP11.39□□□□□ -0.59
TCOF1-203ENST00000394269 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.39□□□□□ -0.59
TCOF1-203ENST00000394269 IRAK2O43187 625 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 ALDH3A1P30838 453 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 SERPINB4P48594 390 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 TAF10Q12962 218 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 FCRL3Q96P31 734 aaPredicted RBP11.39□□□□□ -0.59
TCOF1-203ENST00000394269 KLHL5Q96PQ7 755 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 KDM4CQ9H3R0 1056 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 CAB39LQ9H9S4 337 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 SLC40A1Q9NP59 571 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 C20orf96Q9NUD7 363 aaPredicted RBP11.39□□□□□ -0.59
TCOF1-203ENST00000394269 RBM22Q9NW64 420 aaKnown RBP eCLIP11.39□□□□□ -0.59
TCOF1-203ENST00000394269 PCDHB5Q9Y5E4 795 aa11.39□□□□□ -0.59
TCOF1-203ENST00000394269 ARHGEF37A1IGU5 675 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 ZNF487B1APH4 448 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 EDF1O60869 148 aaKnown RBP11.38□□□□□ -0.59
TCOF1-203ENST00000394269 TARSP26639 723 aaKnown RBP11.38□□□□□ -0.59
TCOF1-203ENST00000394269 CHI3L2Q15782 390 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 KIAA1841Q6NSI8 718 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 RFWD2Q8NHY2 731 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 ARNTL2Q8WYA1 636 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 ALKBH8Q96BT7 664 aaKnown RBP11.38□□□□□ -0.59
TCOF1-203ENST00000394269 LRRC39Q96DD0 335 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 OXNAD1Q96HP4 312 aaPredicted RBP11.38□□□□□ -0.59
TCOF1-203ENST00000394269 RNF208Q9H0X6 261 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 ZNF358Q9NW07 568 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 BAIAP2L1Q9UHR4 511 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 SLC12A8A0AV02 714 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 TPP1O14773 563 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 TROVE2P10155 538 aaKnown RBP eCLIP11.38□□□□□ -0.59
TCOF1-203ENST00000394269 KCNJ2P63252 427 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 PPIDQ08752 370 aaKnown RBP11.38□□□□□ -0.59
TCOF1-203ENST00000394269 MAP3K21Q5TCX8 1036 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 MTDHQ86UE4 582 aaKnown RBP11.38□□□□□ -0.59
TCOF1-203ENST00000394269 SPNS2Q8IVW8 549 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 CNTD1Q8N815 330 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 TMEM237Q96Q45 408 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 RRN3Q9NYV6 651 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 KANSL3Q9P2N6 904 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 SDK1Q7Z5N4 2213 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 RFPL1O75677 317 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 PRKCHP24723 683 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 APLP1P51693 650 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 TBX4P57082 545 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 SEMA3BQ13214 749 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 PRPSAP1Q14558 356 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 NFE2Q16621 373 aaPredicted RBP11.38□□□□□ -0.59
TCOF1-203ENST00000394269 RAP1GAP2Q684P5 730 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 STRA8Q7Z7C7 330 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 MLPHQ9BV36 600 aaPredicted RBP11.38□□□□□ -0.59
TCOF1-203ENST00000394269 FSD1LQ9BXM9 530 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 MYLK2Q9H1R3 596 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 ACTR5Q9H9F9 607 aaPredicted RBP11.38□□□□□ -0.59
TCOF1-203ENST00000394269 IARS2Q9NSE4 1012 aaKnown RBP11.38□□□□□ -0.59
TCOF1-203ENST00000394269 HAO1Q9UJM8 370 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 GGA2Q9UJY4 613 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 HS3ST4Q9Y661 456 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 CDY1Q9Y6F8 540 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 EYSQ5T1H1 3165 aa11.38□□□□□ -0.59
TCOF1-203ENST00000394269 HMX2A2RU54 273 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 E9PAM4 449 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 TM9SF1O15321 606 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 CNTN5O94779 1100 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 FSBPO95073 299 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 CBX6O95503 412 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 PGAM1P18669 254 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 TYMPP19971 482 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 YWHAQP27348 245 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 CYP2C18P33260 490 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 SLC11A1P49279 550 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 MNAT1P51948 309 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 DLG2Q15700 870 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 RTP2Q5QGT7 225 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 RSPO2Q6UXX9 243 aaPredicted RBP11.37□□□□□ -0.59
TCOF1-203ENST00000394269 RNF19BQ6ZMZ0 732 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 CFAP52Q8N1V2 620 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 AGR3Q8TD06 166 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 PKMYT1Q99640 499 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 PHACTR1Q9C0D0 580 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 TNFRSF10BO14763 440 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 NCAM2O15394 837 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 CHRNA4P43681 627 aa11.37□□□□□ -0.59
TCOF1-203ENST00000394269 RPL10AP62906 217 aaKnown RBP11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms