RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 COG5Q9UP83 839 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 SQORQ9Y6N5 450 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 GOLGA8RI6L899 631 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 ASGR2P07307 311 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 COL6A1P12109 1028 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 CHN1P15882 459 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 LRPAP1P30533 357 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 ADRA1BP35368 520 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 NRLP54845 237 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 ITPRIPL1Q6GPH6 555 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 CCSAPQ6IQ19 270 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-205ENST00000392004 IFNLR1Q8IU57 520 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-205ENST00000392004 SPDL1Q96EA4 605 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 TCEAL4Q96EI5 215 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 STAMBPL1Q96FJ0 436 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 LRCH3Q96II8 777 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 TMEM175Q9BSA9 504 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 NOCTQ9UK39 431 aaKnown RBP10.55□□□□□ -0.72
COL6A3-205ENST00000392004 DNPEPQ9ULA0 475 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 DOLKQ9UPQ8 538 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 GPR179Q6PRD1 2367 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 KIAA0355O15063 1070 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 EPHX1P07099 455 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 CRADDP78560 199 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 PPP2R5EQ16537 467 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 NAIF1Q69YI7 327 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-205ENST00000392004 MARK2Q7KZI7 788 aaKnown RBP10.55□□□□□ -0.72
COL6A3-205ENST00000392004 KBTBD7Q8WVZ9 684 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 CDKL2Q92772 493 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 HOMER3Q9NSC5 361 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 ARAP2Q8WZ64 1704 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 EXOC1LA0A1B0GW35 172 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 DNAJC6O75061 913 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 LRCH4O75427 683 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 PBLDP30039 288 aaPredicted RBP10.54□□□□□ -0.72
COL6A3-205ENST00000392004 PEX19P40855 299 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 ADAM17P78536 824 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 GBE1Q04446 702 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 ITIH4Q14624 930 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 CA9Q16790 459 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 RAB6CQ53S08 254 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 ZRANB3Q5FWF4 1079 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 CENPUQ71F23 418 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 TMC3Q7Z5M5 1100 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 PDCD7Q8N8D1 485 aaKnown RBP10.54□□□□□ -0.72
COL6A3-205ENST00000392004 PPP4R1Q8TF05 950 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 ALG3Q92685 438 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 RAB6CQ9H0N0 254 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 NMUR1Q9HB89 426 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 DOCK1Q14185 1865 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 CACNA1EQ15878 2313 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 DOK6Q6PKX4 331 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 GABPB2Q8TAK5 448 aaPredicted RBP10.54□□□□□ -0.72
COL6A3-205ENST00000392004 CYB5D2Q8WUJ1 264 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 KLK6Q92876 244 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 KLF6Q99612 283 aaPredicted RBP10.54□□□□□ -0.72
COL6A3-205ENST00000392004 CLSTN3Q9BQT9 956 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 ELAC1Q9H777 363 aaKnown RBP10.54□□□□□ -0.72
COL6A3-205ENST00000392004 NFS1Q9Y697 457 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 TET1Q8NFU7 2136 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 GIPC1O14908 333 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 RNASEH1O60930 286 aaKnown RBP10.54□□□□□ -0.72
COL6A3-205ENST00000392004 LRIG2O94898 1065 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 ANP32DO95626 131 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 ATP5BP06576 529 aaKnown RBP10.54□□□□□ -0.72
COL6A3-205ENST00000392004 CTPS1P17812 591 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 ITGB6P18564 788 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 TIE1P35590 1138 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 ABCG1P45844 678 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 SPRED3Q2MJR0 410 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 TAOK1Q7L7X3 1001 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 TRPM8Q7Z2W7 1104 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 CRYBG2Q8N1P7 616 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 DEFB119Q8N690 84 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.54□□□□□ -0.72
COL6A3-205ENST00000392004 CENPTQ96BT3 561 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 BORCS6Q96GS4 357 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 VPS11Q9H270 941 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 SCUBE2Q9NQ36 999 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 PIGVQ9NUD9 493 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 ABCB8Q9NUT2 735 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 TDP1Q9NUW8 608 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 GDAP2Q9NXN4 497 aa10.54□□□□□ -0.72
COL6A3-205ENST00000392004 ZFP37Q9Y6Q3 630 aaPredicted RBP10.54□□□□□ -0.72
COL6A3-205ENST00000392004 SEC24AO95486 1093 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 KDELR1P24390 212 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 MAT2AP31153 395 aaKnown RBP10.53□□□□□ -0.72
COL6A3-205ENST00000392004 ARL4CP56559 192 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 SLC25A52Q3SY17 297 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 C6orf118Q5T5N4 469 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 ZDHHC17Q8IUH5 632 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 KLHL29Q96CT2 875 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 OSGEPL1Q9H4B0 414 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 NKIRAS1Q9NYS0 192 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 COLQQ9Y215 455 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-205ENST00000392004 INVSQ9Y283 1065 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 STK38LQ9Y2H1 464 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 TMEM191CA6NGB0 347 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 CTSAP10619 480 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 MGAT3Q09327 533 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms