RNA–Protein interactions for RNA: ENST00000381208.9

RPAIN-202, Transcript of RPA interacting protein, humanhuman

TSL 1 (best) BASIC

Gene RPAIN, Length 1,394 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-202ENST00000381208 IGF2RP11717 2491 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 NUMA1Q14980 2115 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 A0A1B0GVT2 93 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 C1QTNF9BB2RNN3 333 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 DAB1O75553 588 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 C1QTNF9P0C862 333 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 C5AR1P21730 350 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 SLC8A1P32418 973 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 NUDT1P36639 197 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 SCNN1AP37088 669 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 CSNK1EP49674 416 aaKnown RBP13.39□□□□□ -0.27
RPAIN-202ENST00000381208 SLC6A3Q01959 620 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 INAVAQ3KP66 663 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 VWA3BQ502W6 1294 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 BRMS1LQ5PSV4 323 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 OR6B2Q6IFH4 312 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 DHX40Q8IX18 779 aaKnown RBP13.39□□□□□ -0.27
RPAIN-202ENST00000381208 FAM71AQ8IYT1 594 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 CCAR2Q8N163 923 aaKnown RBP13.39□□□□□ -0.27
RPAIN-202ENST00000381208 WDTC1Q8N5D0 677 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 TMEM35BQ8NCS4 154 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 MSANTD4Q8NCY6 345 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 OR2T34Q8NGX1 318 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 MYEOVQ96EZ4 313 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 SPAG5Q96R06 1193 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 TUBGCP2Q9BSJ2 902 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 MFRPQ9BY79 579 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 PDCL3Q9H2J4 239 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 CLSTN2Q9H4D0 955 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 ACP6Q9NPH0 428 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 XPO7Q9UIA9 1087 aaKnown RBP13.39□□□□□ -0.27
RPAIN-202ENST00000381208 PCOLCE2Q9UKZ9 415 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 ANKRD6Q9Y2G4 727 aa13.39□□□□□ -0.27
RPAIN-202ENST00000381208 ADAMTS9Q9P2N4 1935 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 MUC22E2RYF6 1773 aaPredicted RBP13.38□□□□□ -0.27
RPAIN-202ENST00000381208 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.38□□□□□ -0.27
RPAIN-202ENST00000381208 A0A1W2PPC4 97 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 FOXN3O00409 490 aaPredicted RBP13.38□□□□□ -0.27
RPAIN-202ENST00000381208 MID1O15344 667 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 SLC7A4O43246 635 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 PCDHGA12O60330 932 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 CBFA2T3O75081 653 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 CLDN11O75508 207 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 RNASEH2AO75792 299 aaKnown RBP13.38□□□□□ -0.27
RPAIN-202ENST00000381208 F9P00740 461 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 FTH1P19P0C7X4 201 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 GOT1P17174 413 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 SPINK2P20155 84 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 CCR5P51681 352 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 GALCP54803 685 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 C21orf59P57076 290 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 ZNF177Q13360 481 aaPredicted RBP13.38□□□□□ -0.27
RPAIN-202ENST00000381208 TAF5Q15542 800 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 KIF19Q2TAC6 998 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 FAM46CQ5VWP2 391 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 FBXL22Q6P050 247 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 OLFML1Q6UWY5 402 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 MMS22LQ6ZRQ5 1243 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 FAM183BPQ6ZVS7 135 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 SND1Q7KZF4 910 aaKnown RBP eCLIP13.38□□□□□ -0.27
RPAIN-202ENST00000381208 PASD1Q8IV76 773 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 MMAAQ8IVH4 418 aaKnown RBP13.38□□□□□ -0.27
RPAIN-202ENST00000381208 RPRD1AQ96P16 312 aaPredicted RBP13.38□□□□□ -0.27
RPAIN-202ENST00000381208 ACE2Q9BYF1 805 aaPredicted RBP13.38□□□□□ -0.27
RPAIN-202ENST00000381208 KDM4CQ9H3R0 1056 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 SLC25A13Q9UJS0 675 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 ZMIZ1Q9ULJ6 1067 aa13.38□□□□□ -0.27
RPAIN-202ENST00000381208 FNDC3AQ9Y2H6 1198 aaKnown RBP13.38□□□□□ -0.27
RPAIN-202ENST00000381208 FAM208BQ5VWN6 2430 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 A0A1W2PP55 124 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 TTC34A8MYJ7 566 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 VILLO15195 856 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 ALOX15BO15296 676 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 YKT6O15498 198 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 TOP3BO95985 862 aaKnown RBP13.37□□□□□ -0.27
RPAIN-202ENST00000381208 PDGFRAP16234 1089 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 CDH5P33151 784 aaPredicted RBP13.37□□□□□ -0.27
RPAIN-202ENST00000381208 CLCN1P35523 988 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 GRK6P43250 576 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 CCT8P50990 548 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 FAM193AP78312 1265 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 BNC1Q01954 994 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 CCDC15Q0P6D6 951 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 AUHQ13825 339 aaKnown RBP13.37□□□□□ -0.27
RPAIN-202ENST00000381208 C5orf22Q49AR2 442 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 PTPN20Q4JDL3 420 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 SLC45A4Q5BKX6 768 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 SLC47A2Q86VL8 602 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 APCDD1Q8J025 514 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 CHCHD4Q8N4Q1 142 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 RHBDD1Q8TEB9 315 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 OR8D1Q8WZ84 308 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 PTPRN2Q92932 1015 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 C18orf8Q96DM3 657 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 PGAP3Q96FM1 320 aaPredicted RBP13.37□□□□□ -0.27
RPAIN-202ENST00000381208 CAMK1GQ96NX5 476 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 FAM129BQ96TA1 746 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 NUP62CLQ9H1M0 184 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 NEUROG2Q9H2A3 272 aa13.37□□□□□ -0.27
RPAIN-202ENST00000381208 SIX2Q9NPC8 291 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms