RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 ANKK1Q8NFD2 765 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 RDH11Q8TC12 318 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 CALML6Q8TD86 181 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 TCP10LQ8TDR4 215 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 CLEC4CQ8WTT0 213 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 DEPDC1BQ8WUY9 529 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 SEPT8Q92599 483 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 TKTL2Q9H0I9 626 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 CXCL16Q9H2A7 254 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 MMADHCQ9H3L0 296 aaPredicted RBP8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 ARNT2Q9HBZ2 717 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 CASS4Q9NQ75 786 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 STARD7Q9NQZ5 370 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 FGFR1OP2Q9NVK5 253 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 DNAJC17Q9NVM6 304 aaKnown RBP8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 MIOSQ9NXC5 875 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 KCNK4Q9NYG8 393 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 ZFATQ9P243 1243 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 CTNNAL1Q9UBT7 734 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 GABRQQ9UN88 632 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 ANKRD6Q9Y2G4 727 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 TTLL3Q9Y4R7 772 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 MAD1L1Q9Y6D9 718 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 CAPN7Q9Y6W3 813 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 TRIP11Q15643 1979 aa8.93□□□□□ -0.98
SNRNP40-202ENST00000373720 TSC2P49815 1807 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 CXorf51AA0A1B0GTR3 108 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 TCRBV7S3A2A0A539 114 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 CASTOR2A6NHX0 329 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 KCNU1A8MYU2 1149 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 DNM1LO00429 736 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 PIK3R2O00459 728 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 NRP1O14786 923 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 MFSD11O43934 449 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 CCDC22O60826 627 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 EFCAB14O75071 495 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 RASSF9O75901 435 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 BEST1O76090 585 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 UNC5CO95185 931 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 PAPSS2O95340 614 aaPredicted RBP8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 CTSHP09668 335 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 NEFHP12036 1026 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 RHOQP17081 205 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 BDNFP23560 247 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 ACAT1P24752 427 aaKnown RBP8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 PTPN3P26045 913 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 CTGFP29279 349 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 SERPINB5P36952 375 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 GRIK1P39086 918 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 TUFMP49411 452 aaKnown RBP8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 NAA20P61599 178 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 GPR17Q13304 367 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 MPP3Q13368 585 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 PCID2Q5JVF3 399 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 MANEALQ5VSG8 457 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 KIAA0319Q5VV43 1072 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 AFMIDQ63HM1 303 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 KCTD11Q693B1 232 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 ZNF534Q76KX8 674 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 BHLHA9Q7RTU4 235 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 ARHGAP24Q8N264 748 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 AGGF1Q8N302 714 aaeCLIP8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 PPM1NQ8N819 430 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 DQX1Q8TE96 717 aaKnown RBP8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 LENG1Q96BZ8 264 aaPredicted RBP8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 BTN2A3PQ96KV6 586 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 PWWP2AQ96N64 755 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 ZNF599Q96NL3 588 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 SRPK1Q96SB4 655 aaKnown RBP8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 IL12RB2Q99665 862 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 C19orf43Q9BQ61 176 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 RTP3Q9BQQ7 232 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 TSSK1BQ9BXA7 367 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 MAGEB5Q9BZ81 275 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 UBE2OQ9C0C9 1292 aaKnown RBP8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 GPBP1L1Q9HC44 474 aaPredicted RBP8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 TLR8Q9NR97 1041 aaKnown RBP8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 THAP1Q9NVV9 213 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 GPATCH2LQ9NWQ4 482 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 SIRPGQ9P1W8 387 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 IPO11Q9UI26 975 aaKnown RBP8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 RIMKLBQ9ULI2 386 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 VANGL2Q9ULK5 521 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 HBS1LQ9Y450 684 aaKnown RBP8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 PCDHB7Q9Y5E2 793 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 DOCK3Q8IZD9 2030 aa8.92□□□□□ -0.98
SNRNP40-202ENST00000373720 ARHGAP42A6NI28 874 aa8.91□□□□□ -0.98
SNRNP40-202ENST00000373720 TRIM49D1C9J1S8 452 aa8.91□□□□□ -0.98
SNRNP40-202ENST00000373720 SLCO1B7G3V0H7 640 aa8.91□□□□□ -0.98
SNRNP40-202ENST00000373720 CLDN5O00501 218 aa8.91□□□□□ -0.98
SNRNP40-202ENST00000373720 RFPL1O75677 317 aa8.91□□□□□ -0.98
SNRNP40-202ENST00000373720 LRIG2O94898 1065 aa8.91□□□□□ -0.98
SNRNP40-202ENST00000373720 POMCP01189 267 aa8.91□□□□□ -0.98
SNRNP40-202ENST00000373720 EPOP01588 193 aa8.91□□□□□ -0.98
SNRNP40-202ENST00000373720 FGFR3P22607 806 aa8.91□□□□□ -0.98
SNRNP40-202ENST00000373720 RFC2P35250 354 aa8.91□□□□□ -0.98
SNRNP40-202ENST00000373720 ETFBP38117 255 aa8.91□□□□□ -0.98
SNRNP40-202ENST00000373720 SLC26A3P40879 764 aa8.91□□□□□ -0.98
SNRNP40-202ENST00000373720 SERPINB4P48594 390 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms