RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 PRICKLE1Q96MT3 831 aaPredicted RBP14.33□□□□□ -0.12
VPS29-201ENST00000360579 FAM129BQ96TA1 746 aa14.33□□□□□ -0.12
VPS29-201ENST00000360579 K7ELQ4 463 aaPredicted RBP14.32□□□□□ -0.12
VPS29-201ENST00000360579 RHOBTB3O94955 611 aa14.32□□□□□ -0.12
VPS29-201ENST00000360579 LUC7L3O95232 432 aaKnown RBP14.32□□□□□ -0.12
VPS29-201ENST00000360579 MZF1P28698 734 aaPredicted RBP14.32□□□□□ -0.12
VPS29-201ENST00000360579 RPS24P62847 133 aaKnown RBP14.32□□□□□ -0.12
VPS29-201ENST00000360579 DAB2P98082 770 aa14.32□□□□□ -0.12
VPS29-201ENST00000360579 NNTQ13423 1086 aa14.32□□□□□ -0.12
VPS29-201ENST00000360579 CUL2Q13617 745 aa14.32□□□□□ -0.12
VPS29-201ENST00000360579 PKDCCQ504Y2 493 aa14.32□□□□□ -0.12
VPS29-201ENST00000360579 NADSYN1Q6IA69 706 aa14.32□□□□□ -0.12
VPS29-201ENST00000360579 PCSK4Q6UW60 755 aa14.32□□□□□ -0.12
VPS29-201ENST00000360579 KDM7AQ6ZMT4 941 aa14.32□□□□□ -0.12
VPS29-201ENST00000360579 DSG4Q86SJ6 1040 aa14.32□□□□□ -0.12
VPS29-201ENST00000360579 SPATS2Q86XZ4 545 aaKnown RBP14.32□□□□□ -0.12
VPS29-201ENST00000360579 STK40Q8N2I9 435 aa14.32□□□□□ -0.12
VPS29-201ENST00000360579 UBA3Q8TBC4 463 aa14.32□□□□□ -0.12
VPS29-201ENST00000360579 SERPINB11Q96P15 392 aa14.32□□□□□ -0.12
VPS29-201ENST00000360579 SPAG5Q96R06 1193 aa14.32□□□□□ -0.12
VPS29-201ENST00000360579 PRAMEF26H0Y7S4 382 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 O00370 1275 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 SIGLEC6O43699 453 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 RNGTTO60942 597 aaKnown RBP14.31□□□□□ -0.12
VPS29-201ENST00000360579 FBXO21O94952 628 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 LTFP02788 710 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 EPB41P11171 864 aaKnown RBP14.31□□□□□ -0.12
VPS29-201ENST00000360579 CTSOP43234 321 aaPredicted RBP14.31□□□□□ -0.12
VPS29-201ENST00000360579 PPP2CBP62714 309 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 PPP2CAP67775 309 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 SULT2A1Q06520 285 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 SLC12A1Q13621 1099 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 EDRF1Q3B7T1 1238 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 FOXD4L6Q3SYB3 417 aaPredicted RBP14.31□□□□□ -0.12
VPS29-201ENST00000360579 SETMARQ53H47 684 aaPredicted RBP14.31□□□□□ -0.12
VPS29-201ENST00000360579 FSCBQ5H9T9 825 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 MS4A13Q5J8X5 152 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 FAM46CQ5VWP2 391 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 LCLAT1Q6UWP7 414 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 FOXD4L3Q6VB84 417 aaPredicted RBP14.31□□□□□ -0.12
VPS29-201ENST00000360579 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.31□□□□□ -0.12
VPS29-201ENST00000360579 TRIM69Q86WT6 500 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 PTPRN2Q92932 1015 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 FAM131CQ96AQ9 280 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 HIC2Q96JB3 615 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 DEPDC7Q96QD5 511 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 ARHGAP20Q9P2F6 1191 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 CYTH4Q9UIA0 394 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 SLCO3A1Q9UIG8 710 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 TLR6Q9Y2C9 796 aa14.31□□□□□ -0.12
VPS29-201ENST00000360579 TP53BP1Q12888 1972 aaPredicted RBP14.31□□□□□ -0.12
VPS29-201ENST00000360579 CETN3O15182 167 aa14.3□□□□□ -0.12
VPS29-201ENST00000360579 PLRG1O43660 514 aaKnown RBP14.3□□□□□ -0.12
VPS29-201ENST00000360579 DXOO77932 396 aaKnown RBP14.3□□□□□ -0.12
VPS29-201ENST00000360579 ZSCAN22P10073 491 aaPredicted RBP14.3□□□□□ -0.12
VPS29-201ENST00000360579 TBXAS1P24557 533 aaPredicted RBP14.3□□□□□ -0.12
VPS29-201ENST00000360579 DRD3P35462 400 aa14.3□□□□□ -0.12
VPS29-201ENST00000360579 ERVPABLB-1P60509 514 aa14.3□□□□□ -0.12
VPS29-201ENST00000360579 STILQ15468 1287 aa14.3□□□□□ -0.12
VPS29-201ENST00000360579 DCAF6Q58WW2 860 aa14.3□□□□□ -0.12
VPS29-201ENST00000360579 FOXD4L5Q5VV16 416 aaPredicted RBP14.3□□□□□ -0.12
VPS29-201ENST00000360579 MMS22LQ6ZRQ5 1243 aa14.3□□□□□ -0.12
VPS29-201ENST00000360579 OR4C6Q8NH72 309 aa14.3□□□□□ -0.12
VPS29-201ENST00000360579 SLC35F5Q8WV83 523 aa14.3□□□□□ -0.12
VPS29-201ENST00000360579 FOXD4L4Q8WXT5 416 aaPredicted RBP14.3□□□□□ -0.12
VPS29-201ENST00000360579 EEF2KMTQ96G04 330 aa14.3□□□□□ -0.12
VPS29-201ENST00000360579 FCRL2Q96LA5 508 aaPredicted RBP14.3□□□□□ -0.12
VPS29-201ENST00000360579 HSFY1Q96LI6 401 aa14.3□□□□□ -0.12
VPS29-201ENST00000360579 DPH1Q9BZG8 443 aa14.3□□□□□ -0.12
VPS29-201ENST00000360579 NUCKS1Q9H1E3 243 aaKnown RBP14.3□□□□□ -0.12
VPS29-201ENST00000360579 EVA1BQ9NVM1 165 aa14.3□□□□□ -0.12
VPS29-201ENST00000360579 TJP2Q9UDY2 1190 aa14.3□□□□□ -0.12
VPS29-201ENST00000360579 RCOR1Q9UKL0 485 aa14.3□□□□□ -0.12
VPS29-201ENST00000360579 MAPK8IP1Q9UQF2 711 aa14.3□□□□□ -0.12
VPS29-201ENST00000360579 COQ4Q9Y3A0 265 aa14.3□□□□□ -0.12
VPS29-201ENST00000360579 TRIM38O00635 465 aa14.29□□□□□ -0.12
VPS29-201ENST00000360579 RIOK3O14730 519 aaKnown RBP14.29□□□□□ -0.12
VPS29-201ENST00000360579 SART1O43290 800 aaKnown RBP14.29□□□□□ -0.12
VPS29-201ENST00000360579 SDC3O75056 442 aa14.29□□□□□ -0.12
VPS29-201ENST00000360579 F13A1P00488 732 aa14.29□□□□□ -0.12
VPS29-201ENST00000360579 PAEPP09466 180 aa14.29□□□□□ -0.12
VPS29-201ENST00000360579 ALPPL2P10696 532 aa14.29□□□□□ -0.12
VPS29-201ENST00000360579 PFKFB1P16118 471 aa14.29□□□□□ -0.12
VPS29-201ENST00000360579 CMA1P23946 247 aa14.29□□□□□ -0.12
VPS29-201ENST00000360579 MAT2AP31153 395 aaKnown RBP14.29□□□□□ -0.12
VPS29-201ENST00000360579 LSSP48449 732 aa14.29□□□□□ -0.12
VPS29-201ENST00000360579 RGS7P49802 495 aa14.29□□□□□ -0.12
VPS29-201ENST00000360579 NUCB2P80303 420 aa14.29□□□□□ -0.12
VPS29-201ENST00000360579 ZCWPW2Q504Y3 356 aa14.29□□□□□ -0.12
VPS29-201ENST00000360579 PMF1Q6P1K2 205 aa14.29□□□□□ -0.12
VPS29-201ENST00000360579 CFAP52Q8N1V2 620 aa14.29□□□□□ -0.12
VPS29-201ENST00000360579 KCNE4Q8WWG9 221 aa14.29□□□□□ -0.12
VPS29-201ENST00000360579 OR8D1Q8WZ84 308 aa14.29□□□□□ -0.12
VPS29-201ENST00000360579 KLHDC7BQ96G42 594 aa14.29□□□□□ -0.12
VPS29-201ENST00000360579 NAF1Q96HR8 494 aaKnown RBP14.29□□□□□ -0.12
VPS29-201ENST00000360579 RPL10LQ96L21 214 aaKnown RBP14.29□□□□□ -0.12
VPS29-201ENST00000360579 PPP1R9BQ96SB3 815 aa14.29□□□□□ -0.12
VPS29-201ENST00000360579 TRIM62Q9BVG3 475 aa14.29□□□□□ -0.12
VPS29-201ENST00000360579 PCDHB1Q9Y5F3 818 aa14.29□□□□□ -0.12
VPS29-201ENST00000360579 MYO18BQ8IUG5 2567 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms