RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 DLG1Q12959 904 aa9.46□□□□□ -0.9
VPS13A-203ENST00000360280 PLEKHF1Q96S99 279 aa9.46□□□□□ -0.9
VPS13A-203ENST00000360280 ZC3H11AO75152 810 aaKnown RBP eCLIP9.46□□□□□ -0.9
VPS13A-203ENST00000360280 LDOC1O95751 146 aaPredicted RBP9.46□□□□□ -0.9
VPS13A-203ENST00000360280 MTG1Q9BT17 334 aaPredicted RBP9.46□□□□□ -0.9
VPS13A-203ENST00000360280 OSBPL11Q9BXB4 747 aa9.46□□□□□ -0.9
VPS13A-203ENST00000360280 RPL5P46777 297 aaKnown RBP9.45□□□□□ -0.9
VPS13A-203ENST00000360280 ALX1Q15699 326 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 PHF10Q8WUB8 498 aaKnown RBP9.45□□□□□ -0.9
VPS13A-203ENST00000360280 BORCS5Q969J3 196 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 AAASQ9NRG9 546 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 PCDHB7Q9Y5E2 793 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 MAGEB3O15480 346 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 CYP1A1P04798 512 aaPredicted RBP9.45□□□□□ -0.9
VPS13A-203ENST00000360280 PDHA2P29803 388 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 FMR1Q06787 632 aaKnown RBP eCLIP9.45□□□□□ -0.93e-6■■■■□ 26.4
VPS13A-203ENST00000360280 STOX2Q9P2F5 926 aaPredicted RBP9.45□□□□□ -0.9
VPS13A-203ENST00000360280 RBM7Q9Y580 266 aaKnown RBP9.45□□□□□ -0.9
VPS13A-203ENST00000360280 RGS10O43665 173 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 OXCT1P55809 520 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 GRSF1Q12849 480 aaKnown RBP eCLIP9.45□□□□□ -0.9
VPS13A-203ENST00000360280 SPDYCQ5MJ68 293 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 N4BP2L1Q5TBK1 243 aaPredicted RBP9.45□□□□□ -0.9
VPS13A-203ENST00000360280 MCOLN3Q8TDD5 553 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 CLK4Q9HAZ1 481 aaKnown RBP9.45□□□□□ -0.9
VPS13A-203ENST00000360280 KLRC1P26715 233 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 RENBPP51606 427 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 MGAT5BQ3V5L5 792 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 TTLL6Q8N841 843 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 ZC3H10Q96K80 434 aaKnown RBP9.45□□□□□ -0.9
VPS13A-203ENST00000360280 ORAI2Q96SN7 254 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 ST3GAL5Q9UNP4 418 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 GZMAP12544 262 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 MGAT5Q09328 741 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 C1orf189Q5VU69 101 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 CRELD2Q6UXH1 353 aaPredicted RBP9.45□□□□□ -0.9
VPS13A-203ENST00000360280 RNF44Q7L0R7 432 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 OFCC1Q8IZS5 231 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 TMEM121Q9BTD3 319 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 TRIM3O75382 744 aaPredicted RBP9.45□□□□□ -0.9
VPS13A-203ENST00000360280 NTSP30990 170 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 RPL9P32969 192 aaKnown RBP9.45□□□□□ -0.9
VPS13A-203ENST00000360280 USP46P62068 366 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 PERM1Q5SV97 790 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 GALNT18Q6P9A2 607 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 KCNMB4Q86W47 210 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 ZNF540Q8NDQ6 660 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 HPS1Q92902 700 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 YME1L1Q96TA2 773 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 PCDH9Q9HC56 1237 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 MID1IP1Q9NPA3 183 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 TMEM51Q9NW97 253 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 MRPS7Q9Y2R9 242 aaKnown RBP9.45□□□□□ -0.9
VPS13A-203ENST00000360280 H7C4K7 107 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 ENPEPQ07075 957 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 TUBA3EQ6PEY2 450 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 NECTIN3Q9NQS3 549 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 PTGS2P35354 604 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 SPIDRQ14159 915 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 KCNA10Q16322 511 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 POTEHQ6S545 545 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 BPIFB6Q8NFQ5 453 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 KBTBD7Q8WVZ9 684 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 RNPEPL1Q9HAU8 725 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 GIT1Q9Y2X7 761 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 KMOO15229 486 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 CD151P48509 253 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 KLHDC7AQ5VTJ3 777 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 CCSAPQ6IQ19 270 aaPredicted RBP9.45□□□□□ -0.9
VPS13A-203ENST00000360280 SPAG16Q8N0X2 631 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 GTF3C2Q8WUA4 911 aaPredicted RBP9.45□□□□□ -0.9
VPS13A-203ENST00000360280 MASTLQ96GX5 879 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 TBCDQ9BTW9 1192 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 CCNT2O60583 730 aaKnown RBP9.45□□□□□ -0.9
VPS13A-203ENST00000360280 MYCP01106 439 aaPredicted RBP9.45□□□□□ -0.9
VPS13A-203ENST00000360280 HERC6Q8IVU3 1022 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 ZSCAN18Q8TBC5 510 aaPredicted RBP9.45□□□□□ -0.9
VPS13A-203ENST00000360280 NUDT12Q9BQG2 462 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 PTGFRNQ9P2B2 879 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 OR5F1O95221 314 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 EGFRP00533 1210 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 HOXB8P17481 243 aaPredicted RBP9.45□□□□□ -0.9
VPS13A-203ENST00000360280 L2HGDHQ9H9P8 463 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 TBX20Q9UMR3 447 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 LRRC7Q96NW7 1537 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 NLRP1Q9C000 1473 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 NMT2O60551 498 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 CYP2C9P11712 490 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 ALADP13716 330 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 TTC29Q8NA56 475 aaPredicted RBP9.45□□□□□ -0.9
VPS13A-203ENST00000360280 CDRT15Q96T59 188 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 THAP2Q9H0W7 228 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 DSEQ9UL01 958 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 GRIP1Q9Y3R0 1128 aa9.45□□□□□ -0.9
VPS13A-203ENST00000360280 ABLIM1O14639 778 aa9.44□□□□□ -0.9
VPS13A-203ENST00000360280 AP1G2O75843 785 aa9.44□□□□□ -0.9
VPS13A-203ENST00000360280 TXNP10599 105 aaKnown RBP9.44□□□□□ -0.9
VPS13A-203ENST00000360280 FICDQ9BVA6 458 aa9.44□□□□□ -0.9
VPS13A-203ENST00000360280 BHLHE41Q9C0J9 482 aaPredicted RBP9.44□□□□□ -0.9
VPS13A-203ENST00000360280 MARK1Q9P0L2 795 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms