RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 PRKD1Q15139 912 aaPredicted RBP20.41■□□□□ 0.86
CLN3-205ENST00000359984 TTC39BQ5VTQ0 682 aaPredicted RBP20.41■□□□□ 0.86
CLN3-205ENST00000359984 CELF5Q8N6W0 485 aaKnown RBP20.41■□□□□ 0.86
CLN3-205ENST00000359984 TDRD5Q8NAT2 981 aaKnown RBP20.41■□□□□ 0.86
CLN3-205ENST00000359984 SMARCD2Q92925 531 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 RSPRY1Q96DX4 576 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 TMA16Q96EY4 203 aaKnown RBP20.41■□□□□ 0.86
CLN3-205ENST00000359984 KIF9Q9HAQ2 790 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 CDH7Q9ULB5 785 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 ESYT3A0FGR9 886 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 CFAP69A5D8W1 941 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 DFFAO00273 331 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 KCNN4O15554 427 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 CLDN11O75508 207 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 IFNB1P01574 187 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 KRT14P02533 472 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 VAV1P15498 845 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 VIPR2P41587 438 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 NRLP54845 237 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 TRADDQ15628 312 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 DUPD1Q68J44 220 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 FBXO38Q6PIJ6 1188 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 CHST9Q7L1S5 443 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 HJURPQ8NCD3 748 aaPredicted RBP20.41■□□□□ 0.86
CLN3-205ENST00000359984 HDAC11Q96DB2 347 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 RIPOR3Q96MK2 946 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 TRIM31Q9BZY9 425 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 RAB17Q9H0T7 212 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 A0A1B0GVM2 712 aa20.4■□□□□ 0.86
CLN3-205ENST00000359984 TCAF2A6NFQ2 919 aa20.4■□□□□ 0.86
CLN3-205ENST00000359984 TBL1XO60907 577 aa20.4■□□□□ 0.86
CLN3-205ENST00000359984 PPIDQ08752 370 aaKnown RBP20.4■□□□□ 0.86
CLN3-205ENST00000359984 AP1B1Q10567 949 aa20.4■□□□□ 0.86
CLN3-205ENST00000359984 FAM182AQ5T1J6 154 aa20.4■□□□□ 0.86
CLN3-205ENST00000359984 DEPDC1BQ8WUY9 529 aa20.4■□□□□ 0.86
CLN3-205ENST00000359984 RTP4Q96DX8 246 aa20.4■□□□□ 0.86
CLN3-205ENST00000359984 BRD8Q9H0E9 1235 aa20.4■□□□□ 0.86
CLN3-205ENST00000359984 GDF3Q9NR23 364 aa20.4■□□□□ 0.86
CLN3-205ENST00000359984 MTHFRP42898 656 aa20.39■□□□□ 0.86
CLN3-205ENST00000359984 PAPOLAP51003 745 aaKnown RBP20.39■□□□□ 0.86
CLN3-205ENST00000359984 ARHGAP36Q6ZRI8 547 aa20.39■□□□□ 0.86
CLN3-205ENST00000359984 CASKIN2Q8WXE0 1202 aa20.39■□□□□ 0.86
CLN3-205ENST00000359984 SEC14L1Q92503 715 aa20.39■□□□□ 0.86
CLN3-205ENST00000359984 MYADMQ96S97 322 aa20.39■□□□□ 0.86
CLN3-205ENST00000359984 DPH5Q9H2P9 285 aa20.39■□□□□ 0.86
CLN3-205ENST00000359984 LINC00597Q9H2U6 94 aa20.39■□□□□ 0.86
CLN3-205ENST00000359984 PCDH9Q9HC56 1237 aa20.39■□□□□ 0.86
CLN3-205ENST00000359984 ASIC3Q9UHC3 531 aa20.39■□□□□ 0.86
CLN3-205ENST00000359984 NUP205Q92621 2012 aa20.39■□□□□ 0.86
CLN3-205ENST00000359984 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.39■□□□□ 0.85
CLN3-205ENST00000359984 RASA4BC9J798 803 aa20.39■□□□□ 0.85
CLN3-205ENST00000359984 RASA4O43374 803 aa20.39■□□□□ 0.85
CLN3-205ENST00000359984 RAMP2O60895 175 aa20.39■□□□□ 0.85
CLN3-205ENST00000359984 VPS41P49754 854 aa20.39■□□□□ 0.85
CLN3-205ENST00000359984 VSNL1P62760 191 aa20.39■□□□□ 0.85
CLN3-205ENST00000359984 ZNF177Q13360 481 aaPredicted RBP20.39■□□□□ 0.85
CLN3-205ENST00000359984 HEATR6Q6AI08 1181 aaKnown RBP20.39■□□□□ 0.85
CLN3-205ENST00000359984 TPGS1Q6ZTW0 290 aa20.39■□□□□ 0.85
CLN3-205ENST00000359984 IFT20Q8IY31 132 aa20.39■□□□□ 0.85
CLN3-205ENST00000359984 CCDC89Q8N998 374 aa20.39■□□□□ 0.85
CLN3-205ENST00000359984 OR52K2Q8NGK3 314 aa20.39■□□□□ 0.85
CLN3-205ENST00000359984 HTR3CQ8WXA8 447 aa20.39■□□□□ 0.85
CLN3-205ENST00000359984 BHMTQ93088 406 aa20.39■□□□□ 0.85
CLN3-205ENST00000359984 TSGA13Q96PP4 275 aa20.39■□□□□ 0.85
CLN3-205ENST00000359984 TRPV4Q9HBA0 871 aa20.39■□□□□ 0.85
CLN3-205ENST00000359984 TBC1D14Q9P2M4 693 aa20.39■□□□□ 0.85
CLN3-205ENST00000359984 RAB21Q9UL25 225 aa20.39■□□□□ 0.85
CLN3-205ENST00000359984 SNX24Q9Y343 169 aa20.39■□□□□ 0.85
CLN3-205ENST00000359984 IVDP26440 423 aa20.38■□□□□ 0.85
CLN3-205ENST00000359984 YBEYP58557 167 aaPredicted RBP20.38■□□□□ 0.85
CLN3-205ENST00000359984 POLD3Q15054 466 aaPredicted RBP20.38■□□□□ 0.85
CLN3-205ENST00000359984 MPPE1Q53F39 396 aa20.38■□□□□ 0.85
CLN3-205ENST00000359984 WDR93Q6P2C0 686 aa20.38■□□□□ 0.85
CLN3-205ENST00000359984 Q7L0L9 218 aa20.38■□□□□ 0.85
CLN3-205ENST00000359984 ATPAF2Q8N5M1 289 aa20.38■□□□□ 0.85
CLN3-205ENST00000359984 SMRP1Q8NCR6 262 aa20.38■□□□□ 0.85
CLN3-205ENST00000359984 DDI1Q8WTU0 396 aa20.38■□□□□ 0.85
CLN3-205ENST00000359984 RUBCNQ92622 972 aa20.38■□□□□ 0.85
CLN3-205ENST00000359984 HMCESQ96FZ2 354 aa20.38■□□□□ 0.85
CLN3-205ENST00000359984 POMKQ9H5K3 350 aa20.38■□□□□ 0.85
CLN3-205ENST00000359984 TBC1D30Q9Y2I9 924 aa20.38■□□□□ 0.85
CLN3-205ENST00000359984 WNT6Q9Y6F9 365 aa20.38■□□□□ 0.85
CLN3-205ENST00000359984 NUP210Q8TEM1 1887 aaPredicted RBP20.38■□□□□ 0.85
CLN3-205ENST00000359984 TYW5A2RUC4 315 aaKnown RBP20.37■□□□□ 0.85
CLN3-205ENST00000359984 MAFKO60675 156 aa20.37■□□□□ 0.85
CLN3-205ENST00000359984 FCARP24071 287 aa20.37■□□□□ 0.85
CLN3-205ENST00000359984 RPL22P35268 128 aaKnown RBP20.37■□□□□ 0.85
CLN3-205ENST00000359984 RPL21P46778 160 aaKnown RBP20.37■□□□□ 0.85
CLN3-205ENST00000359984 DRG2P55039 364 aaKnown RBP20.37■□□□□ 0.85
CLN3-205ENST00000359984 PARP15Q460N3 678 aa20.37■□□□□ 0.85
CLN3-205ENST00000359984 MPP7Q5T2T1 576 aa20.37■□□□□ 0.85
CLN3-205ENST00000359984 TMEM25Q86YD3 366 aa20.37■□□□□ 0.85
CLN3-205ENST00000359984 LRRC49Q8IUZ0 686 aa20.37■□□□□ 0.85
CLN3-205ENST00000359984 MYLIPQ8WY64 445 aa20.37■□□□□ 0.85
CLN3-205ENST00000359984 ARHGAP42A6NI28 874 aa20.37■□□□□ 0.85
CLN3-205ENST00000359984 CCNCP24863 283 aa20.37■□□□□ 0.85
CLN3-205ENST00000359984 HOXD9P28356 352 aaPredicted RBP20.37■□□□□ 0.85
CLN3-205ENST00000359984 ACVRL1P37023 503 aa20.37■□□□□ 0.85
CLN3-205ENST00000359984 ADCY8P40145 1251 aa20.37■□□□□ 0.85
CLN3-205ENST00000359984 CARSP49589 748 aaKnown RBP20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms