RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 CST8O60676 142 aa9.41□□□□□ -0.9
UPF2-202ENST00000357604 POP4O95707 220 aaKnown RBP9.41□□□□□ -0.9
UPF2-202ENST00000357604 F11P03951 625 aa9.41□□□□□ -0.9
UPF2-202ENST00000357604 HOXB2P14652 356 aa9.41□□□□□ -0.9
UPF2-202ENST00000357604 RFC1P35251 1148 aaPredicted RBP9.41□□□□□ -0.9
UPF2-202ENST00000357604 KPNA2P52292 529 aaKnown RBP9.41□□□□□ -0.9
UPF2-202ENST00000357604 TERF1P54274 439 aa9.41□□□□□ -0.9
UPF2-202ENST00000357604 DR1Q01658 176 aa9.41□□□□□ -0.9
UPF2-202ENST00000357604 GNA12Q03113 381 aa9.41□□□□□ -0.9
UPF2-202ENST00000357604 ITFG1Q8TB96 612 aa9.41□□□□□ -0.9
UPF2-202ENST00000357604 HEPHQ9BQS7 1158 aa9.41□□□□□ -0.9
UPF2-202ENST00000357604 SNRNP25Q9BV90 132 aaKnown RBP9.41□□□□□ -0.9
UPF2-202ENST00000357604 CEP44Q9C0F1 390 aa9.41□□□□□ -0.9
UPF2-202ENST00000357604 ABCB8Q9NUT2 735 aa9.41□□□□□ -0.9
UPF2-202ENST00000357604 KLHL11Q9NVR0 708 aa9.41□□□□□ -0.9
UPF2-202ENST00000357604 BFARQ9NZS9 450 aa9.41□□□□□ -0.9
UPF2-202ENST00000357604 IL36AQ9UHA7 158 aa9.41□□□□□ -0.9
UPF2-202ENST00000357604 DOCK5Q9H7D0 1870 aa9.41□□□□□ -0.9
UPF2-202ENST00000357604 FRMPD3Q5JV73 1810 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 PRR5-ARHGAP8B1AHC4 643 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 KPNA3O00505 521 aaPredicted RBP9.4□□□□□ -0.9
UPF2-202ENST00000357604 AFF1P51825 1210 aaKnown RBP9.4□□□□□ -0.9
UPF2-202ENST00000357604 TTC23LQ6PF05 361 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 NLRP9Q7RTR0 991 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 C12orf50Q8NA57 414 aaPredicted RBP9.4□□□□□ -0.9
UPF2-202ENST00000357604 POMKQ9H5K3 350 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 LRRC40Q9H9A6 602 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 LMAN1LQ9HAT1 526 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 NSMCE4AQ9NXX6 385 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.4□□□□□ -0.9
UPF2-202ENST00000357604 PCDHB9Q9Y5E1 797 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 PCDHGC5Q9Y5F6 944 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 TARSL2A2RTX5 802 aaKnown RBP9.4□□□□□ -0.9
UPF2-202ENST00000357604 UNGP13051 313 aaPredicted RBP9.4□□□□□ -0.9
UPF2-202ENST00000357604 SUOXP51687 545 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 C15orf59Q2T9L4 293 aaPredicted RBP9.4□□□□□ -0.9
UPF2-202ENST00000357604 PRR23BQ6ZRT6 265 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 NT5DC3Q86UY8 548 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 NPAS3Q8IXF0 933 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 ZNF513Q8N8E2 541 aaPredicted RBP9.4□□□□□ -0.9
UPF2-202ENST00000357604 SMRP1Q8NCR6 262 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 LMO3Q8TAP4 145 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 SCG3Q8WXD2 468 aaKnown RBP9.4□□□□□ -0.9
UPF2-202ENST00000357604 OSBPL7Q9BZF2 842 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 NT5MQ9NPB1 228 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 MRFAP1Q9Y605 127 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 SPECC1L-ADORA2AF8WAN1 911 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 KDELR1P24390 212 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 ARL4CP56559 192 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 AP1S1P61966 158 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 NTHL1P78549 312 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 DHX34Q14147 1143 aaKnown RBP9.4□□□□□ -0.9
UPF2-202ENST00000357604 SYTL3Q4VX76 610 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 CARD16Q5EG05 197 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 SNX30Q5VWJ9 437 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 OLFML1Q6UWY5 402 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 CCDC91Q7Z6B0 441 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.4□□□□□ -0.9
UPF2-202ENST00000357604 TBC1D17Q9HA65 648 aa9.4□□□□□ -0.9
UPF2-202ENST00000357604 KANSL1LA0AUZ9 987 aa9.4□□□□□ -0.91
UPF2-202ENST00000357604 FAM187AA6NFU0 413 aa9.4□□□□□ -0.91
UPF2-202ENST00000357604 RASA4BC9J798 803 aa9.4□□□□□ -0.91
UPF2-202ENST00000357604 RNF225M0QZC1 329 aaPredicted RBP9.4□□□□□ -0.91
UPF2-202ENST00000357604 TNFRSF10AO00220 468 aa9.4□□□□□ -0.91
UPF2-202ENST00000357604 ADAM12O43184 909 aa9.4□□□□□ -0.91
UPF2-202ENST00000357604 RASA4O43374 803 aa9.4□□□□□ -0.91
UPF2-202ENST00000357604 FOXD2O60548 495 aaPredicted RBP9.4□□□□□ -0.91
UPF2-202ENST00000357604 IL1BP01584 269 aa9.4□□□□□ -0.91
UPF2-202ENST00000357604 SLC2A4P14672 509 aa9.4□□□□□ -0.91
UPF2-202ENST00000357604 HTR1BP28222 390 aa9.4□□□□□ -0.91
UPF2-202ENST00000357604 PCDH20Q8N6Y1 951 aaKnown RBP9.4□□□□□ -0.91
UPF2-202ENST00000357604 ARHGEF38Q9NXL2 777 aa9.4□□□□□ -0.91
UPF2-202ENST00000357604 AGO1Q9UL18 857 aaKnown RBP9.4□□□□□ -0.91
UPF2-202ENST00000357604 FAM170BA6NMN3 283 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 HCRTO43612 131 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 CHRNB2P17787 502 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 CSKP41240 450 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 CXCR3P49682 368 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 FAM193AP78312 1265 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 IL10RBQ08334 325 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 XRCC4Q13426 336 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 PTK2BQ14289 1009 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 ARID5BQ14865 1188 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 ACOX1Q15067 660 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 LY6G5CQ5SRR4 150 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 DENND2CQ68D51 928 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 TAS2R42Q7RTR8 314 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 HDDC3Q8N4P3 179 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 CALML6Q8TD86 181 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 ULK4Q96C45 1275 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 PCDHB18PQ96TA0 734 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 PSMB7Q99436 277 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 SMG9Q9H0W8 520 aaKnown RBP9.39□□□□□ -0.91
UPF2-202ENST00000357604 PCDHA3Q9Y5H8 950 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 MAD1L1Q9Y6D9 718 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 SLC30A1Q9Y6M5 507 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 TCRBV21S2A2A0A5A6 115 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 GFRA2O00451 464 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 OPHN1O60890 802 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 PHF2O75151 1096 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms