RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 LOC400499M0QZD8 3231 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 MAN2B1O00754 1011 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 LIASO43766 372 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 PHF2O75151 1096 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 CSDE1O75534 798 aaKnown RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 DGKIO75912 1065 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 RECQL4O94761 1208 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 PROSCO94903 275 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 CPP00450 1065 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 ASLP04424 464 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 WEE2P0C1S8 567 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 RHOXF2BP0C7M4 288 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 CXCL8P10145 99 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 MYCLP12524 364 aaPredicted RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 OSMP13725 252 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 INSRRP14616 1297 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 PSMA3P25788 255 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 CST5P28325 142 aaPredicted RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 LRPAP1P30533 357 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 COILP38432 576 aaPredicted RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 STAT1P42224 750 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 ETV4P43268 484 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 MAGEA12P43365 314 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 NOP2P46087 812 aaKnown RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 CLCN3P51790 818 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 HDAC4P56524 1084 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 PITX1P78337 314 aaPredicted RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 TIAL1Q01085 375 aaKnown RBP eCLIP2.43□□□□□ -2.02
VPS54-202ENST00000354504 RAPGEF1Q13905 1077 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 CA9Q16790 459 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 CCDC14Q49A88 953 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 FILIP1LQ4L180 1135 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 FAM102BQ5T8I3 360 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 ANKRD22Q5VYY1 191 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 KCNV1Q6PIU1 500 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 LRIG3Q6UXM1 1119 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 MAEAQ7L5Y9 396 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 GPRIN1Q7Z2K8 1008 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 MAMDC2Q7Z304 686 aaPredicted RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 VSIG1Q86XK7 387 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 SLC17A8Q8NDX2 589 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 OR2W6PQ8NHA6 318 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 PUM2Q8TB72 1066 aaKnown RBP eCLIP2.43□□□□□ -2.021e-6■■■□□ 17.2
VPS54-202ENST00000354504 PIP4K2CQ8TBX8 421 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 CPA5Q8WXQ8 436 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 SEPT1Q8WYJ6 367 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP2.43□□□□□ -2.02
VPS54-202ENST00000354504 TRIB2Q92519 343 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 NKD2Q969F2 451 aaPredicted RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 EXOC4Q96A65 974 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 CPB2Q96IY4 423 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 CEP170P1Q96L14 293 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 CCDC42Q96M95 316 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 PTCHD1Q96NR3 888 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 PSMB7Q99436 277 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 RHOXF2Q9BQY4 288 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 MRPL45Q9BRJ2 306 aaKnown RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 PAAF1Q9BRP4 392 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 ERP44Q9BS26 406 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 VN1R3Q9BXE9 311 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 AP1M1Q9BXS5 423 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 KMT5AQ9NQR1 393 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 OSER1Q9NX31 292 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 RNF181Q9P0P0 153 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 HESX1Q9UBX0 185 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 TUBGCP4Q9UGJ1 667 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 AGO2Q9UKV8 859 aaKnown RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 NFU1Q9UMS0 254 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 SF3B6Q9Y3B4 125 aaKnown RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 Q9Y3F1 56 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 OAS3Q9Y6K5 1087 aaKnown RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 WDR87Q6ZQQ6 2873 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 COL5A1P20908 1838 aaPredicted RBP2.42□□□□□ -2.02
VPS54-202ENST00000354504 NBPF19A0A087WUL8 3843 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 TICRRQ7Z2Z1 1910 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 DCHS1Q96JQ0 3298 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 ARHGEF35A5YM69 484 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 FAM90A27PA6NNH2 459 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 OGTO15294 1046 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 RIPK2O43353 540 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 KIF5CO60282 957 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 PSPNO60542 156 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 GSNP06396 782 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 SBK3P0C264 359 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 ETS1P14921 441 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 PECAM1P16284 738 aaPredicted RBP2.42□□□□□ -2.02
VPS54-202ENST00000354504 LMO2P25791 158 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 HOXC13P31276 330 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 SEPHS1P49903 392 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 SLC26A2P50443 739 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 MXI1P50539 228 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 STAT5BP51692 787 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 CDH8P55286 799 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 GJA9P57773 515 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 TPM4P67936 248 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 FKBP1BP68106 108 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 NOP14P78316 857 aaKnown RBP2.42□□□□□ -2.02
VPS54-202ENST00000354504 GPC5P78333 572 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 PRKCQQ04759 706 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 RASA2Q15283 850 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms