RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 DHX58Q96C10 678 aa11.61□□□□□ -0.55
RTN3-204ENST00000354497 SGSM3Q96HU1 749 aa11.61□□□□□ -0.55
RTN3-204ENST00000354497 HEXIM2Q96MH2 286 aaKnown RBP11.61□□□□□ -0.55
RTN3-204ENST00000354497 DPH1Q9BZG8 443 aa11.61□□□□□ -0.55
RTN3-204ENST00000354497 IMPG2Q9BZV3 1241 aa11.61□□□□□ -0.55
RTN3-204ENST00000354497 OSBPL2Q9H1P3 480 aa11.61□□□□□ -0.55
RTN3-204ENST00000354497 ERVMER34-1Q9H9K5 563 aa11.61□□□□□ -0.55
RTN3-204ENST00000354497 POLR1BQ9H9Y6 1135 aa11.61□□□□□ -0.55
RTN3-204ENST00000354497 SLC39A2Q9NP94 309 aa11.61□□□□□ -0.55
RTN3-204ENST00000354497 THSD1Q9NS62 852 aa11.61□□□□□ -0.55
RTN3-204ENST00000354497 SFMBT1Q9UHJ3 866 aa11.61□□□□□ -0.55
RTN3-204ENST00000354497 FZD4Q9ULV1 537 aa11.61□□□□□ -0.55
RTN3-204ENST00000354497 SUFUQ9UMX1 484 aa11.61□□□□□ -0.55
RTN3-204ENST00000354497 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.61□□□□□ -0.55
RTN3-204ENST00000354497 CABIN1Q9Y6J0 2220 aa11.61□□□□□ -0.55
RTN3-204ENST00000354497 MSI1O43347 362 aaKnown RBP11.6□□□□□ -0.55
RTN3-204ENST00000354497 OPA1O60313 960 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 ASS1P00966 412 aaKnown RBP11.6□□□□□ -0.55
RTN3-204ENST00000354497 HLA-DRAP01903 254 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 CSKP41240 450 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 ADPRHP54922 357 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 ERVPABLB-1P60509 514 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 SRSF1Q07955 248 aaKnown RBP eCLIP11.6□□□□□ -0.55
RTN3-204ENST00000354497 STAT4Q14765 748 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 TRIP4Q15650 581 aaPredicted RBP11.6□□□□□ -0.55
RTN3-204ENST00000354497 HNRNPA1L2Q32P51 320 aaKnown RBP11.6□□□□□ -0.55
RTN3-204ENST00000354497 POM121L1PQ3SYA9 428 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 C3orf38Q5JPI3 329 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 RFWD3Q6PCD5 774 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 FOXR1Q6PIV2 292 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 KANSL1Q7Z3B3 1105 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 PRPF39Q86UA1 669 aaKnown RBP11.6□□□□□ -0.55
RTN3-204ENST00000354497 EDEM1Q92611 657 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 ABCG4Q9H172 646 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 OLA1Q9NTK5 396 aaKnown RBP11.6□□□□□ -0.55
RTN3-204ENST00000354497 IL17BQ9UHF5 180 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 GOLGA6L7A0A1B0GV03 622 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 TTC34A8MYJ7 566 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 MAGEC1O60732 1142 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 IL1BP01584 269 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 MYF5P13349 255 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 GOT1P17174 413 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 CASP1P29466 404 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 RBMS1P29558 406 aaKnown RBP11.6□□□□□ -0.55
RTN3-204ENST00000354497 LSSP48449 732 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 TKTL1P51854 596 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 SLC8A3P57103 927 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 INCA1Q0VD86 236 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 ZNF211Q13398 564 aaPredicted RBP11.6□□□□□ -0.55
RTN3-204ENST00000354497 KNOP1Q1ED39 458 aaKnown RBP11.6□□□□□ -0.55
RTN3-204ENST00000354497 ZACNQ401N2 412 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 ADGRF1Q5T601 910 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 RNF219Q5W0B1 726 aaPredicted RBP11.6□□□□□ -0.55
RTN3-204ENST00000354497 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.6□□□□□ -0.55
RTN3-204ENST00000354497 CCDC81Q6ZN84 652 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 SV2AQ7L0J3 742 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 KIAA0907Q7Z7F0 614 aaPredicted RBP11.6□□□□□ -0.55
RTN3-204ENST00000354497 SRLQ86TD4 932 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 PIGZQ86VD9 579 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 CCDC117Q8IWD4 279 aaPredicted RBP11.6□□□□□ -0.55
RTN3-204ENST00000354497 C12orf56Q8IXR9 622 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 STK40Q8N2I9 435 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 CARNMT1Q8N4J0 409 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 AADATQ8N5Z0 425 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 MFSD2AQ8NA29 543 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 GOLGA5Q8TBA6 731 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 MYOCQ99972 504 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 ULBP1Q9BZM6 244 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 BLZF1Q9H2G9 400 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 MMRN2Q9H8L6 949 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 CA5BQ9Y2D0 317 aa11.6□□□□□ -0.55
RTN3-204ENST00000354497 HBS1LQ9Y450 684 aaKnown RBP11.6□□□□□ -0.55
RTN3-204ENST00000354497 ATMQ13315 3056 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 KNL1Q8NG31 2342 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 A0A1B0GVM2 712 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 K7ELQ4 463 aaPredicted RBP11.59□□□□□ -0.55
RTN3-204ENST00000354497 CD2BP2O95400 341 aaKnown RBP11.59□□□□□ -0.55
RTN3-204ENST00000354497 ZBED1O96006 694 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 ADH1BP00325 375 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 ASLP04424 464 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 CTSOP43234 321 aaPredicted RBP11.59□□□□□ -0.55
RTN3-204ENST00000354497 NUMBP49757 651 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 CLDN10P78369 228 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 NFKB2Q00653 900 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 COLEC12Q5KU26 742 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 C9orf64Q5T6V5 341 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 CDCP2Q5VXM1 449 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 UNC13DQ70J99 1090 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 MAPK15Q8TD08 544 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 MYO19Q96H55 970 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 NIF3L1Q9GZT8 377 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 CYP3A43Q9HB55 503 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 APOBEC3GQ9HC16 384 aaKnown RBP11.59□□□□□ -0.55
RTN3-204ENST00000354497 KBTBD4Q9NVX7 518 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 ZNF446Q9NWS9 450 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 UCKL1Q9NWZ5 548 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 SATB2Q9UPW6 733 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 MGAQ8IWI9 3026 aa11.59□□□□□ -0.55
RTN3-204ENST00000354497 EDDM13A0A1B0GTR0 161 aa11.58□□□□□ -0.56
RTN3-204ENST00000354497 TYW5A2RUC4 315 aaKnown RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms