RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 CLCNKBP51801 687 aa22.64■■□□□ 1.21
UPF3A-201ENST00000351487 ITPRIPL1Q6GPH6 555 aa22.64■■□□□ 1.21
UPF3A-201ENST00000351487 RBM15BQ8NDT2 890 aaKnown RBP22.64■■□□□ 1.21
UPF3A-201ENST00000351487 C3orf58Q8NDZ4 430 aa22.64■■□□□ 1.21
UPF3A-201ENST00000351487 FAM96AQ9H5X1 160 aa22.64■■□□□ 1.21
UPF3A-201ENST00000351487 CSNK1G1Q9HCP0 422 aa22.64■■□□□ 1.21
UPF3A-201ENST00000351487 TMEM216Q9P0N5 145 aa22.64■■□□□ 1.21
UPF3A-201ENST00000351487 PLA2G4CQ9UP65 541 aa22.64■■□□□ 1.21
UPF3A-201ENST00000351487 SPECC1L-ADORA2AF8WAN1 911 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 SERPINB6P35237 376 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 SPRP35270 261 aaPredicted RBP22.63■■□□□ 1.21
UPF3A-201ENST00000351487 CXCR3P49682 368 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 SERPINB8P50452 374 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 ALDH18A1P54886 795 aaKnown RBP22.63■■□□□ 1.21
UPF3A-201ENST00000351487 CCDC153Q494R4 210 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 DNAL1Q4LDG9 190 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 PPM1JQ5JR12 505 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 C10orf107Q8IVU9 208 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 C2orf69Q8N8R5 385 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 WDR60Q8WVS4 1066 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 SORT1Q99523 831 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 EPAS1Q99814 870 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 MLPHQ9BV36 600 aaPredicted RBP22.63■■□□□ 1.21
UPF3A-201ENST00000351487 C1orf21Q9H246 121 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 TRPV2Q9Y5S1 764 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 CDY2AQ9Y6F7 541 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 M0QZ92 97 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 USP12O75317 370 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 IGHA2P01877 340 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 ALOX15P16050 662 aaPredicted RBP22.63■■□□□ 1.21
UPF3A-201ENST00000351487 ZBTB17Q13105 803 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 NAA25Q14CX7 972 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 RABGAP1LQ5R372 815 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 DCLK2Q8N568 766 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 OR6Y1Q8NGX8 325 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 DPF3Q92784 378 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 UPF1Q92900 1129 aaKnown RBP eCLIP22.63■■□□□ 1.21
UPF3A-201ENST00000351487 TIMM13Q9Y5L4 95 aaPredicted RBP22.63■■□□□ 1.21
UPF3A-201ENST00000351487 SCN10AQ9Y5Y9 1956 aa22.63■■□□□ 1.21
UPF3A-201ENST00000351487 FNDC1Q4ZHG4 1894 aaPredicted RBP22.62■■□□□ 1.21
UPF3A-201ENST00000351487 PRR5-ARHGAP8B1AHC4 643 aa22.62■■□□□ 1.21
UPF3A-201ENST00000351487 PCSK1P29120 753 aa22.62■■□□□ 1.21
UPF3A-201ENST00000351487 CDK7P50613 346 aa22.62■■□□□ 1.21
UPF3A-201ENST00000351487 AFF1P51825 1210 aaKnown RBP22.62■■□□□ 1.21
UPF3A-201ENST00000351487 ARHGAP8P85298 464 aa22.62■■□□□ 1.21
UPF3A-201ENST00000351487 RCN2Q14257 317 aa22.62■■□□□ 1.21
UPF3A-201ENST00000351487 RCN1Q15293 331 aa22.62■■□□□ 1.21
UPF3A-201ENST00000351487 ANKRD20A4Q4UJ75 823 aa22.62■■□□□ 1.21
UPF3A-201ENST00000351487 FBXO27Q8NI29 283 aa22.62■■□□□ 1.21
UPF3A-201ENST00000351487 IRGQQ8WZA9 623 aa22.62■■□□□ 1.21
UPF3A-201ENST00000351487 ST3GAL5Q9UNP4 418 aa22.62■■□□□ 1.21
UPF3A-201ENST00000351487 PSMG1O95456 288 aa22.62■■□□□ 1.21
UPF3A-201ENST00000351487 HARS2P49590 506 aaKnown RBP22.62■■□□□ 1.21
UPF3A-201ENST00000351487 DNAAF3Q8N9W5 541 aa22.62■■□□□ 1.21
UPF3A-201ENST00000351487 PPP4R1Q8TF05 950 aa22.62■■□□□ 1.21
UPF3A-201ENST00000351487 PGLYRP2Q96PD5 576 aa22.62■■□□□ 1.21
UPF3A-201ENST00000351487 WDCPQ9H6R7 721 aa22.62■■□□□ 1.21
UPF3A-201ENST00000351487 CHST12Q9NRB3 414 aa22.62■■□□□ 1.21
UPF3A-201ENST00000351487 DNAJC28Q9NX36 388 aa22.62■■□□□ 1.21
UPF3A-201ENST00000351487 MIOSQ9NXC5 875 aa22.62■■□□□ 1.21
UPF3A-201ENST00000351487 MAGEB16A2A368 324 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 F8W8V4 182 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 LIN7AO14910 233 aaPredicted RBP22.61■■□□□ 1.21
UPF3A-201ENST00000351487 KRT36O76013 467 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 ATP6V1C1P21283 382 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 RPL9P32969 192 aaKnown RBP22.61■■□□□ 1.21
UPF3A-201ENST00000351487 NPY2RP49146 381 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 PM20D1Q6GTS8 502 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 CTU1Q7Z7A3 348 aaKnown RBP22.61■■□□□ 1.21
UPF3A-201ENST00000351487 STRA8Q7Z7C7 330 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 CMC1Q7Z7K0 106 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 KLHDC8BQ8IXV7 354 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 OR12D3Q9UGF7 316 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 PATJQ8NI35 1801 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 TM7SF2O76062 418 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 LRIG2O94898 1065 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 NFKB1P19838 968 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 KDSRQ06136 332 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 SMAD1Q15797 465 aaKnown RBP22.61■■□□□ 1.21
UPF3A-201ENST00000351487 FSTL4Q6MZW2 842 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 ATG14Q6ZNE5 492 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 SCML4Q8N228 414 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 ZSCAN18Q8TBC5 510 aaPredicted RBP22.61■■□□□ 1.21
UPF3A-201ENST00000351487 TEKT5Q96M29 485 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 MCMBPQ9BTE3 642 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 IL22Q9GZX6 179 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 TKTL2Q9H0I9 626 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 STX18Q9P2W9 335 aaKnown RBP22.61■■□□□ 1.21
UPF3A-201ENST00000351487 GIT1Q9Y2X7 761 aa22.61■■□□□ 1.21
UPF3A-201ENST00000351487 ARL5CA6NH57 179 aa22.6■■□□□ 1.21
UPF3A-201ENST00000351487 RALBP11234 206 aa22.6■■□□□ 1.21
UPF3A-201ENST00000351487 MYL4P12829 197 aa22.6■■□□□ 1.21
UPF3A-201ENST00000351487 ACADSP16219 412 aa22.6■■□□□ 1.21
UPF3A-201ENST00000351487 ARRB2P32121 409 aa22.6■■□□□ 1.21
UPF3A-201ENST00000351487 CSE1LP55060 971 aaKnown RBP22.6■■□□□ 1.21
UPF3A-201ENST00000351487 ZNF33AQ06730 810 aa22.6■■□□□ 1.21
UPF3A-201ENST00000351487 UBAP2LQ14157 1087 aaKnown RBP22.6■■□□□ 1.21
UPF3A-201ENST00000351487 DCLRE1AQ6PJP8 1040 aa22.6■■□□□ 1.21
UPF3A-201ENST00000351487 MAVSQ7Z434 540 aa22.6■■□□□ 1.21
UPF3A-201ENST00000351487 CLEC14AQ86T13 490 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms