RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 FYB2Q5VWT5 728 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 SRRM1Q8IYB3 904 aaKnown RBP13.16□□□□□ -0.3
CLK3-201ENST00000345005 CMTR2Q8IYT2 770 aaKnown RBP13.16□□□□□ -0.3
CLK3-201ENST00000345005 TTC9BQ8N6N2 239 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 ENDOVQ8N8Q3 282 aaKnown RBP13.16□□□□□ -0.3
CLK3-201ENST00000345005 GDAP1Q8TB36 358 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 MAML1Q92585 1016 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 CASP10Q92851 521 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 FBXO32Q969P5 355 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 SPDL1Q96EA4 605 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 SEPT5Q99719 369 aaPredicted RBP13.16□□□□□ -0.3
CLK3-201ENST00000345005 FRMD8Q9BZ67 464 aaPredicted RBP13.16□□□□□ -0.3
CLK3-201ENST00000345005 TLR8Q9NR97 1041 aaKnown RBP13.16□□□□□ -0.3
CLK3-201ENST00000345005 EURLQ9NYK6 297 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 CLIC5Q9NZA1 410 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 MFHAS1Q9Y4C4 1052 aa13.16□□□□□ -0.3
CLK3-201ENST00000345005 KIAA1671Q9BY89 1806 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 DOCK4Q8N1I0 1966 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 PTPRSQ13332 1948 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 STK10O94804 968 aaKnown RBP13.15□□□□□ -0.3
CLK3-201ENST00000345005 BAIAP3O94812 1187 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 ZWINTO95229 277 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 LAG3P18627 525 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 PAX7P23759 505 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 ITGB8P26012 769 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 TUFMP49411 452 aaKnown RBP13.15□□□□□ -0.3
CLK3-201ENST00000345005 GLUD2P49448 558 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 PGFP49763 221 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 WDR5P61964 334 aaKnown RBP13.15□□□□□ -0.3
CLK3-201ENST00000345005 USP46P62068 366 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 BIRC2Q13490 618 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 BTG3Q14201 252 aaPredicted RBP13.15□□□□□ -0.3
CLK3-201ENST00000345005 KCNJ11Q14654 390 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 PRKD1Q15139 912 aaPredicted RBP13.15□□□□□ -0.3
CLK3-201ENST00000345005 ANKRD22Q5VYY1 191 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 TRABD2AQ86V40 505 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 PDIK1LQ8N165 341 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 LRRC8CQ8TDW0 803 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 HTR3CQ8WXA8 447 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 TMEM169Q96HH4 297 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 C9orf72Q96LT7 481 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 ZNF570Q96NI8 536 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 BRD8Q9H0E9 1235 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 RAB6BQ9NRW1 208 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 OLA1Q9NTK5 396 aaKnown RBP13.15□□□□□ -0.3
CLK3-201ENST00000345005 GMIPQ9P107 970 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 SFMBT1Q9UHJ3 866 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 XPO7Q9UIA9 1087 aaKnown RBP13.15□□□□□ -0.3
CLK3-201ENST00000345005 TLR6Q9Y2C9 796 aa13.15□□□□□ -0.3
CLK3-201ENST00000345005 EXOC1LA0A1B0GW35 172 aa13.14□□□□□ -0.31
CLK3-201ENST00000345005 GOLGA8MH3BSY2 632 aa13.14□□□□□ -0.31
CLK3-201ENST00000345005 LRIG2O94898 1065 aa13.14□□□□□ -0.31
CLK3-201ENST00000345005 SOD2P04179 222 aa13.14□□□□□ -0.31
CLK3-201ENST00000345005 OR1D2P34982 312 aa13.14□□□□□ -0.31
CLK3-201ENST00000345005 SERPINB6P35237 376 aa13.14□□□□□ -0.31
CLK3-201ENST00000345005 GCKP35557 465 aa13.14□□□□□ -0.31
CLK3-201ENST00000345005 MAGEA6P43360 314 aa13.14□□□□□ -0.31
CLK3-201ENST00000345005 NRLP54845 237 aa13.14□□□□□ -0.31
CLK3-201ENST00000345005 DEFB103AP81534 67 aa13.14□□□□□ -0.31
CLK3-201ENST00000345005 PDIA2Q13087 525 aaKnown RBP13.14□□□□□ -0.31
CLK3-201ENST00000345005 SLC39A11Q8N1S5 342 aa13.14□□□□□ -0.31
CLK3-201ENST00000345005 GPR152Q8TDT2 470 aa13.14□□□□□ -0.31
CLK3-201ENST00000345005 ALKBH8Q96BT7 664 aaKnown RBP13.14□□□□□ -0.31
CLK3-201ENST00000345005 VN1R3Q9BXE9 311 aa13.14□□□□□ -0.31
CLK3-201ENST00000345005 DCLRE1BQ9H816 532 aa13.14□□□□□ -0.31
CLK3-201ENST00000345005 RC3H2Q9HBD1 1191 aaKnown RBP13.14□□□□□ -0.31
CLK3-201ENST00000345005 OSER1Q9NX31 292 aa13.14□□□□□ -0.31
CLK3-201ENST00000345005 SPG21Q9NZD8 308 aa13.14□□□□□ -0.31
CLK3-201ENST00000345005 HSFX1Q9UBD0 423 aa13.14□□□□□ -0.31
CLK3-201ENST00000345005 LNPEPQ9UIQ6 1025 aa13.14□□□□□ -0.31
CLK3-201ENST00000345005 PHTF1Q9UMS5 762 aa13.14□□□□□ -0.31
CLK3-201ENST00000345005 WDR27A2RRH5 827 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 A6NHS1 94 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 KCNU1A8MYU2 1149 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 E7ESA3 106 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 PAGE1O75459 146 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 SOAT2O75908 522 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 TROVE2P10155 538 aaKnown RBP eCLIP13.13□□□□□ -0.31
CLK3-201ENST00000345005 GNAZP19086 355 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 MX2P20592 715 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 PTPN4P29074 926 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 EPHB2P29323 1055 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 AP1B1Q10567 949 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 TAF10Q12962 218 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 CBLBQ13191 982 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 MPP2Q14168 576 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 LBRQ14739 615 aaKnown RBP13.13□□□□□ -0.31
CLK3-201ENST00000345005 UBAP2Q5T6F2 1119 aaKnown RBP13.13□□□□□ -0.31
CLK3-201ENST00000345005 TPGS2Q68CL5 300 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 NAIF1Q69YI7 327 aaPredicted RBP13.13□□□□□ -0.31
CLK3-201ENST00000345005 FAM117BQ6P1L5 589 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.13□□□□□ -0.31
CLK3-201ENST00000345005 ZBED8Q8IZ13 594 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 VPS52Q8N1B4 723 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 KIF2BQ8N4N8 673 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 TAB3Q8N5C8 712 aaPredicted RBP13.13□□□□□ -0.31
CLK3-201ENST00000345005 CCNYQ8ND76 341 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 STKLD1Q8NE28 680 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 CCDC110Q8TBZ0 833 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 MICAL1Q8TDZ2 1067 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms