RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 C10orf53Q8N6V4 93 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 C19orf18Q8NEA5 215 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 SH3TC2Q8TF17 1288 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 KCTD4Q8WVF5 259 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 LPAR1Q92633 364 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 FOPNLQ96NB1 174 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 COPS4Q9BT78 406 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 BDH2Q9BUT1 245 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 SLC4A5Q9BY07 1137 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 SPRTNQ9H040 489 aaPredicted RBP8.85□□□□□ -0.99
RTN3-202ENST00000339997 GANQ9H2C0 597 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 DIABLOQ9NR28 239 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 SELENONQ9NZV5 590 aa8.85□□□□□ -0.99
RTN3-202ENST00000339997 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.85□□□□□ -0.99
RTN3-202ENST00000339997 GLP2RO95838 553 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 KDELR1P24390 212 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 CHI3L1P36222 383 aaPredicted RBP8.84□□□□□ -0.99
RTN3-202ENST00000339997 DGKZQ13574 1117 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 VEPH1Q14D04 833 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 PDK2Q15119 407 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 C6orf52Q5T4I8 152 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 CRELD2Q6UXH1 353 aaPredicted RBP8.84□□□□□ -0.99
RTN3-202ENST00000339997 CLNKQ7Z7G1 428 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 LINC00523Q86TU6 105 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 SLC41A1Q8IVJ1 513 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 C12orf29Q8N999 325 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 OR52K2Q8NGK3 314 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 SPATA20Q8TB22 786 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 ITFG1Q8TB96 612 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 PPP1R14AQ96A00 147 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 MBOAT7Q96N66 472 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 HBEGFQ99075 208 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 GORASP1Q9BQQ3 440 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 DPY30Q9C005 99 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 BCAS3Q9H6U6 928 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 LRRC4CQ9HCJ2 640 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 SAR1AQ9NR31 198 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 RGS18Q9NS28 235 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 COPG2Q9UBF2 871 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 FARP1Q9Y4F1 1045 aaPredicted RBP8.84□□□□□ -0.99
RTN3-202ENST00000339997 IPPQ9Y573 584 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.84□□□□□ -0.99
RTN3-202ENST00000339997 A0A087WXM4 84 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 TCRBV9S1A1TA0A576 114 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 PSMD11O00231 422 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 BTN3A1O00481 513 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 GSC2O15499 205 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 MICAL2O94851 1124 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 IL18RAPO95256 599 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 ICAM1P05362 532 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 COX4I1P13073 169 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 VAV1P15498 845 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 DDX5P17844 614 aaKnown RBP8.84□□□□□ -0.99
RTN3-202ENST00000339997 FUT4P22083 530 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 PCSK1P29120 753 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 FMO4P31512 558 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 MMP13P45452 471 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 HK2P52789 917 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 PRKCQQ04759 706 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 STARD3Q14849 445 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 SKIV2LQ15477 1246 aaKnown RBP8.84□□□□□ -0.99
RTN3-202ENST00000339997 FAM98BQ52LJ0 330 aaKnown RBP8.84□□□□□ -0.99
RTN3-202ENST00000339997 FGD3Q5JSP0 725 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 RFWD3Q6PCD5 774 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 MPZL3Q6UWV2 235 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 C10orf107Q8IVU9 208 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 LPCAT1Q8NF37 534 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 FAM81AQ8TBF8 368 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 MCRS1Q96EZ8 462 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 DEPDC7Q96QD5 511 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 FRMD8Q9BZ67 464 aaPredicted RBP8.84□□□□□ -0.99
RTN3-202ENST00000339997 ALG2Q9H553 416 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 NOL11Q9H8H0 719 aaKnown RBP8.84□□□□□ -0.99
RTN3-202ENST00000339997 DYRK4Q9NR20 520 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 SETD4Q9NVD3 440 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 ZNF180Q9UJW8 692 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 PADI4Q9UM07 663 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 CEMIPQ8WUJ3 1361 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 MGAT4DA6NG13 374 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 CCDC154A6NI56 674 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 C2orf81A6NN90 581 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 SNPHO15079 494 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 HBP1O60381 514 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 ASS1P00966 412 aaKnown RBP8.84□□□□□ -0.99
RTN3-202ENST00000339997 MLNP12872 115 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 ALOX15P16050 662 aaPredicted RBP8.84□□□□□ -0.99
RTN3-202ENST00000339997 NRLP54845 237 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 CSNK2BP67870 215 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 FMO1Q01740 532 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 C1QBPQ07021 282 aaKnown RBP8.84□□□□□ -0.99
RTN3-202ENST00000339997 CDH18Q13634 790 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 BOP1Q14137 746 aaKnown RBP8.84□□□□□ -0.99
RTN3-202ENST00000339997 CCDC153Q494R4 210 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 PPM1JQ5JR12 505 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 SPANXN2Q5MJ10 180 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 PPP1R26Q5T8A7 1209 aaPredicted RBP8.84□□□□□ -0.99
RTN3-202ENST00000339997 HIPK1Q86Z02 1210 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 ADGRF2Q8IZF7 708 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 FBXO39Q8N4B4 442 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 OR5B17Q8NGF7 314 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms