RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 FNIP2Q9P278 1114 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 PPARGC1AQ9UBK2 798 aaKnown RBP13.72□□□□□ -0.21
HMGB1-202ENST00000339872 ZC3H7BQ9UGR2 993 aaKnown RBP13.72□□□□□ -0.21
HMGB1-202ENST00000339872 TRHDEQ9UKU6 1024 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 INSL6Q9Y581 213 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 MAD1L1Q9Y6D9 718 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 ANAPC1Q9H1A4 1944 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 PIAS1O75925 651 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 CNTN5O94779 1100 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 SPATA31D3P0C874 917 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 RHOQP17081 205 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 NFKB1P19838 968 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 CCNCP24863 283 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 CD68P34810 354 aaPredicted RBP13.71□□□□□ -0.21
HMGB1-202ENST00000339872 MDH1P40925 334 aaKnown RBP13.71□□□□□ -0.21
HMGB1-202ENST00000339872 CREMQ03060 361 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 CBLBQ13191 982 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 KLHL38Q2WGJ6 581 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 ITPRIPL1Q6GPH6 555 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 SPATA31D4Q6ZUB0 917 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 EXOC3L1Q86VI1 746 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 TCEAL8Q8IYN2 117 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 C7orf61Q8IZ16 206 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 MPP5Q8N3R9 675 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 ZNF276Q8N554 614 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 KLHL23Q8NBE8 558 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 DPF3Q92784 378 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 IGSF8Q969P0 613 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 LRRC39Q96DD0 335 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 TRMT2BQ96GJ1 504 aaKnown RBP13.71□□□□□ -0.21
HMGB1-202ENST00000339872 RPRD1AQ96P16 312 aaPredicted RBP13.71□□□□□ -0.21
HMGB1-202ENST00000339872 TSGA13Q96PP4 275 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 XPO6Q96QU8 1125 aaKnown RBP13.71□□□□□ -0.21
HMGB1-202ENST00000339872 PRMT1Q99873 361 aaKnown RBP13.71□□□□□ -0.21
HMGB1-202ENST00000339872 GORASP1Q9BQQ3 440 aa13.71□□□□□ -0.21
HMGB1-202ENST00000339872 PIH1D1Q9NWS0 290 aaKnown RBP13.71□□□□□ -0.21
HMGB1-202ENST00000339872 IGLV3-10A0A075B6K4 115 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 GOLGA6L7A0A1B0GV03 622 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 ARHGAP42A6NI28 874 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 MAFKO60675 156 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 SPAG6O75602 509 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 CTSAP10619 480 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 MMP13P45452 471 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 EPHB3P54753 998 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 GEMIN4P57678 1058 aaKnown RBP13.7□□□□□ -0.22
HMGB1-202ENST00000339872 SPARCL1Q14515 664 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 TMEM240Q5SV17 173 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 AFMIDQ63HM1 303 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 NADSYN1Q6IA69 706 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 PSRC1Q6PGN9 363 aaPredicted RBP13.7□□□□□ -0.22
HMGB1-202ENST00000339872 ZNF771Q7L3S4 317 aaPredicted RBP13.7□□□□□ -0.22
HMGB1-202ENST00000339872 CIR1Q86X95 450 aaPredicted RBP13.7□□□□□ -0.22
HMGB1-202ENST00000339872 TDRPQ86YL5 185 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 SIGLEC10Q96LC7 697 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 TEKT5Q96M29 485 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 CNOT10Q9H9A5 744 aaKnown RBP13.7□□□□□ -0.22
HMGB1-202ENST00000339872 TMEM248Q9NWD8 314 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 STK39Q9UEW8 545 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 TTLL3Q9Y4R7 772 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 OBSL1O75147 1896 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.7□□□□□ -0.22
HMGB1-202ENST00000339872 TCRBV9S1A1TA0A576 114 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 LILRB3O75022 631 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 CSPG5O95196 566 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 CNPP09543 421 aaKnown RBP13.7□□□□□ -0.22
HMGB1-202ENST00000339872 MLNP12872 115 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 CCNB1P14635 433 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 PAPOLAP51003 745 aaKnown RBP13.7□□□□□ -0.22
HMGB1-202ENST00000339872 DNAJB7Q7Z6W7 309 aaPredicted RBP13.7□□□□□ -0.22
HMGB1-202ENST00000339872 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.7□□□□□ -0.22
HMGB1-202ENST00000339872 MDM1Q8TC05 714 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 CLP1Q92989 425 aaKnown RBP13.7□□□□□ -0.22
HMGB1-202ENST00000339872 NOL6Q9H6R4 1146 aaKnown RBP13.7□□□□□ -0.22
HMGB1-202ENST00000339872 PPCSQ9HAB8 311 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 PSMC3IPQ9P2W1 217 aaPredicted RBP13.7□□□□□ -0.22
HMGB1-202ENST00000339872 SLC24A2Q9UI40 661 aa13.7□□□□□ -0.22
HMGB1-202ENST00000339872 C2orf78A6NCI8 922 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 A6NNZ2 444 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 SYN1P17600 705 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 TACR2P21452 398 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 HARS2P49590 506 aaKnown RBP13.69□□□□□ -0.22
HMGB1-202ENST00000339872 SESN2P58004 480 aaPredicted RBP13.69□□□□□ -0.22
HMGB1-202ENST00000339872 MTA1Q13330 715 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 OLIG2Q13516 323 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 TUBB8Q3ZCM7 444 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 ACBD5Q5T8D3 534 aaPredicted RBP13.69□□□□□ -0.22
HMGB1-202ENST00000339872 TIGD7Q6NT04 549 aaPredicted RBP13.69□□□□□ -0.22
HMGB1-202ENST00000339872 LRRC8BQ6P9F7 803 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 KLHDC10Q6PID8 442 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 HERC6Q8IVU3 1022 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 SRRM1Q8IYB3 904 aaKnown RBP13.69□□□□□ -0.22
HMGB1-202ENST00000339872 GPR65Q8IYL9 337 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 UMODL1-AS1Q8N2C9 162 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 ZSCAN18Q8TBC5 510 aaPredicted RBP13.69□□□□□ -0.22
HMGB1-202ENST00000339872 PSMG2Q969U7 264 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 CYTH2Q99418 400 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 PAFAH2Q99487 392 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 EBNA1BP2Q99848 306 aaKnown RBP13.69□□□□□ -0.22
HMGB1-202ENST00000339872 RXFP1Q9HBX9 757 aa13.69□□□□□ -0.22
HMGB1-202ENST00000339872 DONSONQ9NYP3 566 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms