RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 KHNYNO15037 678 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ZBTB39O15060 712 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 BUB1O43683 1085 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 KCNH1O95259 989 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 LSM8O95777 96 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ENO2P09104 434 aaPredicted RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 IRF1P10914 325 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 CXCR2P25025 360 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 TXKP42681 527 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ARFIP2P53365 341 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 YWHAGP61981 247 aaKnown RBP eCLIP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 HSF2Q03933 536 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ADAM9Q13443 819 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 HIF1AQ16665 826 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 THEMIS2Q5TEJ8 643 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 TIGD7Q6NT04 549 aaPredicted RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 IL27RAQ6UWB1 636 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 PHACTR4Q8IZ21 702 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 DNERQ8NFT8 737 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 C9orf43Q8TAL5 461 aaPredicted RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 BORCS5Q969J3 196 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 TMEM121Q9BTD3 319 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 SPATC1LQ9H0A9 340 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 SPG21Q9NZD8 308 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 UPB1Q9UBR1 384 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 RAPGEFL1Q9UHV5 662 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 TMCC3Q9ULS5 477 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 HBS1LQ9Y450 684 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 PCDHGB1Q9Y5G3 927 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 UBR3Q6ZT12 1888 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 SALL1Q9NSC2 1324 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 BAIAP3O94812 1187 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 SCAF4O95104 1147 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 FGAP02671 866 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 LYNP07948 512 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 DLATP10515 647 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 BMP4P12644 408 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 GP5P40197 560 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 MDH1P40925 334 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 PNLIPRP1P54315 467 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 TMPRSS15P98073 1019 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 TRAP1Q12931 704 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 DGUOKQ16854 277 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 INO80DQ53TQ3 878 aaPredicted RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 AGAP9Q5VTM2 703 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 PAQR7Q86WK9 346 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 PLD6Q8N2A8 252 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 IL22RA1Q8N6P7 574 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 CYGBQ8WWM9 190 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 FCGR1BQ92637 280 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 PCDHB16Q9NRJ7 776 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 AFF4Q9UHB7 1163 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 CEP250Q9BV73 2442 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 DLX3O60479 287 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 KELP23276 732 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 NR2F2P24468 414 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 GPC5P78333 572 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 RALGDSQ12967 914 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 SLC29A2Q14542 456 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 KCTD19Q17RG1 926 aaPredicted RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 SAMD4BQ5PRF9 694 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 SPRYD7Q5W111 196 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 PYHIN1Q6K0P9 492 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ISLR2Q6UXK2 745 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 LINC00299Q6ZSB3 139 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ARMCX6Q7L4S7 300 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 RASSF3Q86WH2 238 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 UBE2J2Q8N2K1 259 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 TRIM2Q9C040 744 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 NXF1Q9UBU9 619 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 UTYO14607 1347 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 PNPLA7Q6ZV29 1317 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 POTECB2RU33 542 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 C5orf58C9J3I9 102 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 PTGES3LE9PB15 166 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 G3V2T6 193 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 SOAT2O75908 522 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 RTP1P59025 263 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 POLR2LP62875 67 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 DNM1Q05193 864 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 PPARAQ07869 468 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 LGALS3BPQ08380 585 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ITGA7Q13683 1181 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 NFE2Q16621 373 aaPredicted RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 SYTL3Q4VX76 610 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ZC2HC1CQ53FD0 456 aaPredicted RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 WASHC2DQ5SRD0 308 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 SWT1Q5T5J6 900 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 C1orf146Q5VVC0 180 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 MRNIPQ6NTE8 343 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 PACS2Q86VP3 889 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 CCDC185Q8N715 623 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 TMCO6Q96DC7 493 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 VPS11Q9H270 941 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 TMX1Q9H3N1 280 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ZFP14Q9HCL3 533 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 TMEM216Q9P0N5 145 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 TUBE1Q9UJT0 475 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ST3GAL5Q9UNP4 418 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 TBC1D30Q9Y2I9 924 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms