RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 SIKE1Q9BRV8 207 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 SNRNP25Q9BV90 132 aaKnown RBP10.37□□□□□ -0.75
CHD3-201ENST00000330494 SYTL2Q9HCH5 934 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 NCKIPSDQ9NZQ3 722 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 TRUB2O95900 331 aaKnown RBP10.37□□□□□ -0.75
CHD3-201ENST00000330494 IGSF6O95976 241 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 ATP5C1P36542 298 aaKnown RBP10.37□□□□□ -0.75
CHD3-201ENST00000330494 FLT3LGP49771 235 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 MRPS35P82673 323 aaKnown RBP10.37□□□□□ -0.75
CHD3-201ENST00000330494 PRKCQQ04759 706 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 RGMBQ6NW40 437 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 CREG2Q8IUH2 290 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 FBXO39Q8N4B4 442 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 MYOCQ99972 504 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 TMPRSS4Q9NRS4 437 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 RBP1P09455 135 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 CTPS1P17812 591 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 NOS2P35228 1153 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 GALNT3Q14435 633 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 BNC2Q6ZN30 1099 aaPredicted RBP10.36□□□□□ -0.75
CHD3-201ENST00000330494 DEFB107AQ8IZN7 70 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 KCTD14Q9BQ13 255 aaPredicted RBP10.36□□□□□ -0.75
CHD3-201ENST00000330494 B3GNT5Q9BYG0 378 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 CCDC167Q9P0B6 97 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 NDOR1Q9UHB4 597 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 LINC00854A0A1B0GVQ3 168 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 OR4Q2P0C623 313 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 SETMARQ53H47 684 aaPredicted RBP10.36□□□□□ -0.75
CHD3-201ENST00000330494 TTC33Q6PID6 262 aaPredicted RBP10.36□□□□□ -0.75
CHD3-201ENST00000330494 STX19Q8N4C7 294 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 OR6K2Q8NGY2 324 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 PHF21AQ96BD5 680 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 MRPL9Q9BYD2 267 aaKnown RBP10.36□□□□□ -0.75
CHD3-201ENST00000330494 RMND5AQ9H871 391 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 NMRK1Q9NWW6 199 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 FMN2Q9NZ56 1722 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 KRT87PA6NCN2 255 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 SIGLEC16A6NMB1 481 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 SERPINB1P30740 379 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 RPS7P62081 194 aaKnown RBP10.36□□□□□ -0.75
CHD3-201ENST00000330494 PHKG1Q16816 387 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 CEP78Q5JTW2 689 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 PIGZQ86VD9 579 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 TMEM159Q96B96 161 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 KLRG1Q96E93 195 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 HIC2Q96JB3 615 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 NAT9Q9BTE0 207 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 ARIH1Q9Y4X5 557 aaPredicted RBP10.36□□□□□ -0.75
CHD3-201ENST00000330494 HDCP19113 662 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 ZNF844Q08AG5 666 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 RETSATQ6NUM9 610 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 CHMP1BQ7LBR1 199 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 WNT8BQ93098 351 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 RHBGQ9H310 441 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 MAN1C1Q9NR34 630 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 SCN3BQ9NY72 215 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 IL1RAPL1Q9NZN1 696 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 TUFMP49411 452 aaKnown RBP10.36□□□□□ -0.75
CHD3-201ENST00000330494 CLK1P49759 484 aaKnown RBP10.36□□□□□ -0.75
CHD3-201ENST00000330494 ARMC12Q5T9G4 340 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 ZSCAN18Q8TBC5 510 aaPredicted RBP10.36□□□□□ -0.75
CHD3-201ENST00000330494 VCPIP1Q96JH7 1222 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 ABCG8Q9H221 673 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 CERS4Q9HA82 394 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 TNFSF13BQ9Y275 285 aa10.36□□□□□ -0.75
CHD3-201ENST00000330494 TBC1D12O60347 775 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 PAX7P23759 505 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 CNTFP26441 200 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 PLPP4Q5VZY2 271 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 CYB5D1Q6P9G0 228 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 TRPC4APQ8TEL6 797 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 CPNE1Q99829 537 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 CATSPERZQ9NTU4 200 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 MPP6Q9NZW5 540 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 BTBD7Q9P203 1132 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 MAP10Q9P2G4 905 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 SLC24A2Q9UI40 661 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 PHLPP1O60346 1717 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 PDE2AO00408 941 aaPredicted RBP10.35□□□□□ -0.75
CHD3-201ENST00000330494 TM9SF1O15321 606 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 SEC22BO75396 215 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 FARP2O94887 1054 aaPredicted RBP10.35□□□□□ -0.75
CHD3-201ENST00000330494 RPLP2P05387 115 aaKnown RBP10.35□□□□□ -0.75
CHD3-201ENST00000330494 ARF4P18085 180 aaPredicted RBP10.35□□□□□ -0.75
CHD3-201ENST00000330494 TNNI3P19429 210 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 TYMPP19971 482 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 FMO1Q01740 532 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 PFKPQ01813 784 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 MTSS1LQ765P7 747 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 ARL10Q8N8L6 244 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 CAVIN3Q969G5 261 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 ZNF558Q96NG5 402 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 GANQ9H2C0 597 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 DNMT3LQ9UJW3 386 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 A0A0B4J269 797 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 BTBD19C9JJ37 291 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 USP2O75604 605 aaPredicted RBP10.35□□□□□ -0.75
CHD3-201ENST00000330494 HPGDP15428 266 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 GP5P40197 560 aa10.35□□□□□ -0.75
CHD3-201ENST00000330494 ITIH4Q14624 930 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms