RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 DHFR2Q86XF0 187 aa15.02■□□□□ -0
TCOF1-201ENST00000323668 PCDH20Q8N6Y1 951 aaKnown RBP15.02■□□□□ -0
TCOF1-201ENST00000323668 ZNF555Q8NEP9 628 aa15.02■□□□□ -0
TCOF1-201ENST00000323668 MAML3Q96JK9 1138 aa15.02■□□□□ -0
TCOF1-201ENST00000323668 HACD3Q9P035 362 aa15.02■□□□□ -0
TCOF1-201ENST00000323668 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.02■□□□□ -0
TCOF1-201ENST00000323668 SOAT2O75908 522 aa15.02□□□□□ -0.01
TCOF1-201ENST00000323668 NRLP54845 237 aa15.02□□□□□ -0.01
TCOF1-201ENST00000323668 PPIDQ08752 370 aaKnown RBP15.02□□□□□ -0.01
TCOF1-201ENST00000323668 TBCELQ5QJ74 424 aa15.02□□□□□ -0.01
TCOF1-201ENST00000323668 LPCAT4Q643R3 524 aa15.02□□□□□ -0.01
TCOF1-201ENST00000323668 EP400NLQ6ZTU2 488 aa15.02□□□□□ -0.01
TCOF1-201ENST00000323668 SLC25A23Q9BV35 468 aa15.02□□□□□ -0.01
TCOF1-201ENST00000323668 COG4Q9H9E3 785 aa15.02□□□□□ -0.01
TCOF1-201ENST00000323668 CD274Q9NZQ7 290 aa15.02□□□□□ -0.01
TCOF1-201ENST00000323668 HES2Q9Y543 173 aa15.02□□□□□ -0.01
TCOF1-201ENST00000323668 TIMM13Q9Y5L4 95 aaPredicted RBP15.02□□□□□ -0.01
TCOF1-201ENST00000323668 ADGRA2Q96PE1 1338 aa15.02□□□□□ -0.01
TCOF1-201ENST00000323668 ODC1P11926 461 aa15.02□□□□□ -0.01
TCOF1-201ENST00000323668 ERCC2P18074 760 aa15.02□□□□□ -0.01
TCOF1-201ENST00000323668 KLF10Q13118 480 aa15.02□□□□□ -0.01
TCOF1-201ENST00000323668 MSS51Q4VC12 460 aa15.02□□□□□ -0.01
TCOF1-201ENST00000323668 SAMD4BQ5PRF9 694 aaKnown RBP15.02□□□□□ -0.01
TCOF1-201ENST00000323668 PTAR1Q7Z6K3 402 aaPredicted RBP15.02□□□□□ -0.01
TCOF1-201ENST00000323668 CCDC28BQ9BUN5 200 aa15.02□□□□□ -0.01
TCOF1-201ENST00000323668 STRA6Q9BX79 667 aa15.02□□□□□ -0.01
TCOF1-201ENST00000323668 MDM4O15151 490 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 TYROBPO43914 113 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 PLIN3O60664 434 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 SLC2A3P11169 496 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 PLK1P53350 603 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 FOLH1Q04609 750 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 GAD2Q05329 585 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 TRMT10BQ6PF06 316 aaKnown RBP15.01□□□□□ -0.01
TCOF1-201ENST00000323668 FBXW8Q8N3Y1 598 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 NETO2Q8NC67 525 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 DIS3LQ8TF46 1054 aaKnown RBP15.01□□□□□ -0.01
TCOF1-201ENST00000323668 SNRNP27Q8WVK2 155 aaKnown RBP15.01□□□□□ -0.01
TCOF1-201ENST00000323668 VPS50Q96JG6 964 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 CDH19Q9H159 772 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 ATXN3LQ9H3M9 355 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 PRKAG3Q9UGI9 489 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 NENFQ9UMX5 172 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 LRRC42Q9Y546 428 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 FAM95CA0A1B0GW59 222 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 LTFP02788 710 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 C2P06681 752 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 THP07101 528 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 CPB1P15086 417 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 NFKBIAP25963 317 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 ZNF135P52742 658 aaPredicted RBP15.01□□□□□ -0.01
TCOF1-201ENST00000323668 HPS6Q86YV9 775 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 PQLC1Q8N2U9 271 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 MYRFQ9Y2G1 1151 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 CHD4Q14839 1912 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 SAC3D1A6NKF1 404 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 GPR25O00155 361 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 BNIP3LO60238 219 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 CABYRO75952 493 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 ZNF23P17027 643 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 PMF1Q6P1K2 205 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 B3GNT6Q6ZMB0 384 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 PCDH19Q8TAB3 1148 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 RCN3Q96D15 328 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 MCRS1Q96EZ8 462 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 ASPSCR1Q9BZE9 553 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 TBC1D13Q9NVG8 400 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.01□□□□□ -0.01
TCOF1-201ENST00000323668 PSMD12O00232 456 aaPredicted RBP15.01□□□□□ -0.01
TCOF1-201ENST00000323668 GCATO75600 419 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 FASP25445 335 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 PIK3R1P27986 724 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 NRF1Q16656 503 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 FUT11Q495W5 492 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 UBAP2Q5T6F2 1119 aaKnown RBP15.01□□□□□ -0.01
TCOF1-201ENST00000323668 NEPROQ6NW34 567 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 STRADAQ7RTN6 431 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 CDHR5Q9HBB8 845 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 GPRC5DQ9NZD1 345 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 OR12D3Q9UGF7 316 aa15.01□□□□□ -0.01
TCOF1-201ENST00000323668 TMCC1O94876 653 aa15□□□□□ -0.01
TCOF1-201ENST00000323668 NPR3P17342 541 aa15□□□□□ -0.01
TCOF1-201ENST00000323668 NFKB1P19838 968 aa15□□□□□ -0.01
TCOF1-201ENST00000323668 NFYCQ13952 458 aa15□□□□□ -0.01
TCOF1-201ENST00000323668 GPR162Q16538 588 aa15□□□□□ -0.01
TCOF1-201ENST00000323668 METTL21CQ5VZV1 264 aa15□□□□□ -0.01
TCOF1-201ENST00000323668 LRRC52Q8N7C0 313 aa15□□□□□ -0.01
TCOF1-201ENST00000323668 GPR20Q99678 358 aa15□□□□□ -0.01
TCOF1-201ENST00000323668 TKTL2Q9H0I9 626 aa15□□□□□ -0.01
TCOF1-201ENST00000323668 ETAA1Q9NY74 926 aa15□□□□□ -0.01
TCOF1-201ENST00000323668 PSMD13Q9UNM6 376 aa15□□□□□ -0.01
TCOF1-201ENST00000323668 MYH11P35749 1972 aa15□□□□□ -0.01
TCOF1-201ENST00000323668 TJP1Q07157 1748 aa15□□□□□ -0.01
TCOF1-201ENST00000323668 TRAFD1O14545 582 aaPredicted RBP15□□□□□ -0.01
TCOF1-201ENST00000323668 TBC1D4O60343 1298 aa15□□□□□ -0.01
TCOF1-201ENST00000323668 YY1P25490 414 aa15□□□□□ -0.01
TCOF1-201ENST00000323668 ASPAP45381 313 aa15□□□□□ -0.01
TCOF1-201ENST00000323668 PCID2Q5JVF3 399 aa15□□□□□ -0.01
TCOF1-201ENST00000323668 LIPMQ5VYY2 423 aa15□□□□□ -0.01
TCOF1-201ENST00000323668 PIWIL4Q7Z3Z4 852 aaKnown RBP15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms