RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 SCAMP5Q8TAC9 235 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 CEP76Q8TAP6 659 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 KIAA1524Q8TCG1 905 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 CSGALNACT1Q8TDX6 532 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 ZNF384Q8TF68 577 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 GCDHQ92947 438 aaPredicted RBP4.83□□□□□ -1.64
CD44-202ENST00000278385 LPPQ93052 612 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 VPS33AQ96AX1 596 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 KTI12Q96EK9 354 aaPredicted RBP4.83□□□□□ -1.64
CD44-202ENST00000278385 PGAP3Q96FM1 320 aaPredicted RBP4.83□□□□□ -1.64
CD44-202ENST00000278385 LOXL4Q96JB6 756 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 MRGPRX1Q96LB2 322 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 AGAP3Q96P47 875 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 NEK1Q96PY6 1258 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 LMF1Q96S06 567 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 PRPF18Q99633 342 aaKnown RBP4.83□□□□□ -1.64
CD44-202ENST00000278385 TCHPQ9BT92 498 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 THUMPD3Q9BV44 507 aaKnown RBP4.83□□□□□ -1.64
CD44-202ENST00000278385 MUC13Q9H3R2 512 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 PRDM12Q9H4Q4 367 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 MROH8Q9H579 483 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 SEC61A2Q9H9S3 476 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 SNTG1Q9NSN8 517 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 SACM1LQ9NTJ5 587 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 PNPOQ9NVS9 261 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 RBM28Q9NW13 759 aaKnown RBP4.83□□□□□ -1.64
CD44-202ENST00000278385 HCFC1R1Q9NWW0 138 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 AKAP7Q9P0M2 348 aaPredicted RBP4.83□□□□□ -1.64
CD44-202ENST00000278385 RNF181Q9P0P0 153 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 ACTR3BQ9P1U1 418 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 DNAJB9Q9UBS3 223 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 CPA4Q9UI42 421 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 TMPRSS11EQ9UL52 423 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 CAMK2AQ9UQM7 478 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 NAALADL1Q9UQQ1 740 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 ITM2BQ9Y287 266 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 HS3ST4Q9Y661 456 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 C4AP0C0L4 1744 aa4.83□□□□□ -1.64
CD44-202ENST00000278385 A0A0G2JLL6 359 aaPredicted RBP4.82□□□□□ -1.64
CD44-202ENST00000278385 CLRN2A0PK11 232 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 GLTPD2A6NH11 291 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 MCF2LO15068 1137 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 PROM1O43490 865 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 STX6O43752 255 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 RTN2O75298 545 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 TOMM70O94826 608 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 PRPF6O94906 941 aaKnown RBP4.82□□□□□ -1.64
CD44-202ENST00000278385 METTL18O95568 372 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 OLFM2O95897 454 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 PNPP00491 289 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 TYRP14679 529 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 PAX7P23759 505 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 IFNAR2P48551 515 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 LGALS4P56470 323 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 GNAI1P63096 354 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 SMU1Q2TAY7 513 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 MAJINQ3KP22 176 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 RABL6Q3YEC7 729 aaPredicted RBP4.82□□□□□ -1.64
CD44-202ENST00000278385 CAVIN4Q5BKX8 364 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 DCAF17Q5H9S7 520 aaPredicted RBP4.82□□□□□ -1.64
CD44-202ENST00000278385 TOR1AIP1Q5JTV8 583 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 KRBOX4Q5JUW0 171 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 PLEKHS1Q5SXH7 462 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 CYP20A1Q6UW02 462 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 USP30Q70CQ3 517 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 IKBIPQ70UQ0 350 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 COPS6Q7L5N1 327 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 HEATR3Q7Z4Q2 680 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 DZIP1Q86YF9 867 aaKnown RBP4.82□□□□□ -1.64
CD44-202ENST00000278385 C16orf71Q8IYS4 520 aaPredicted RBP4.82□□□□□ -1.64
CD44-202ENST00000278385 ZNF34Q8IZ26 560 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 USP38Q8NB14 1042 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 C3orf20Q8ND61 904 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 SPATA20Q8TB22 786 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 SLC22A17Q8WUG5 538 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 DPF2Q92785 391 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 FAM162AQ96A26 154 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 CFAP36Q96G28 342 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 HIST1H2AHQ96KK5 128 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 GBP5Q96PP8 586 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 LRRC37BQ96QE4 947 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 HIST1H2AJQ99878 128 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 OR10A2Q9H208 303 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 OPA3Q9H6K4 179 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 SNX15Q9NRS6 342 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 TAB2Q9NYJ8 693 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 NDUFAF4Q9P032 175 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 CALCOCO1Q9P1Z2 691 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 ANAPC5Q9UJX4 755 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 MTO1Q9Y2Z2 717 aaKnown RBP4.82□□□□□ -1.64
CD44-202ENST00000278385 COL5A3P25940 1745 aaPredicted RBP4.82□□□□□ -1.64
CD44-202ENST00000278385 TJP1Q07157 1748 aa4.82□□□□□ -1.64
CD44-202ENST00000278385 MYH14Q7Z406 1995 aaKnown RBP4.82□□□□□ -1.64
CD44-202ENST00000278385 RNF123Q5XPI4 1314 aa4.81□□□□□ -1.64
CD44-202ENST00000278385 LINC00854A0A1B0GVQ3 168 aa4.81□□□□□ -1.64
CD44-202ENST00000278385 TRIM43BA6NCK2 446 aa4.81□□□□□ -1.64
CD44-202ENST00000278385 B8ZZF3 427 aa4.81□□□□□ -1.64
CD44-202ENST00000278385 M0QX08 132 aa4.81□□□□□ -1.64
CD44-202ENST00000278385 TBC1D4O60343 1298 aa4.81□□□□□ -1.64
CD44-202ENST00000278385 NRP2O60462 931 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms