RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 FNDC3BQ53EP0 1204 aaKnown RBP11.67□□□□□ -0.54
USP53-201ENST00000274030 DPP10Q8N608 796 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 PCDH20Q8N6Y1 951 aaKnown RBP11.67□□□□□ -0.54
USP53-201ENST00000274030 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.67□□□□□ -0.54
USP53-201ENST00000274030 GDPD5Q8WTR4 605 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 LPPQ93052 612 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 BTBD10Q9BSF8 475 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 ALG9Q9H6U8 611 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 H3BN98 237 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 TPP1O14773 563 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 FGFR3P22607 806 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 NEDD8Q15843 81 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 TRMT5Q32P41 509 aaKnown RBP11.67□□□□□ -0.54
USP53-201ENST00000274030 FOXR1Q6PIV2 292 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 POLNQ7Z5Q5 900 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 TRAPPC5Q8IUR0 188 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 PRKD2Q9BZL6 878 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 ETNK2Q9NVF9 386 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 RRN3Q9NYV6 651 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 FAM20BO75063 409 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 IGSF6O95976 241 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 TSPAN8P19075 237 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 TRIM25Q14258 630 aaKnown RBP11.66□□□□□ -0.54
USP53-201ENST00000274030 PFKFB4Q16877 469 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 SDHAF4Q5VUM1 108 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 TMEM26Q6ZUK4 368 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 LUZP2Q86TE4 346 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 OR56A4Q8NGH8 313 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 HAS1Q92839 578 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 PWWP2AQ96N64 755 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 DCUN1D5Q9BTE7 237 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 TM6SF2Q9BZW4 377 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 RHBGQ9H310 441 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 BPIFA1Q9NP55 256 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 ARL15Q9NXU5 204 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 PAIP2BQ9ULR5 123 aaKnown RBP11.66□□□□□ -0.54
USP53-201ENST00000274030 DUSP12Q9UNI6 340 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 TSC22D2O75157 780 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 FKBP6O75344 327 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 SHBGP04278 402 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 CLTBP09497 229 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 OR56A5P0C7T3 313 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 PIRTP0C851 137 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 FLT3P36888 993 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 HSPA14Q0VDF9 509 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 NIPA1Q7RTP0 329 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 ZNF410Q86VK4 478 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 CDK5RAP1Q96SZ6 601 aaKnown RBP11.66□□□□□ -0.54
USP53-201ENST00000274030 H0YC42 278 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 IRF6O14896 467 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 ZNF862O60290 1169 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 NUDT14O95848 222 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 CD86P42081 329 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 MAMLD1Q13495 774 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 ARMC12Q5T9G4 340 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 SNX30Q5VWJ9 437 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 FAM183BPQ6ZVS7 135 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 SPACA7Q96KW9 195 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 PRKAG3Q9UGI9 489 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 SIK3Q9Y2K2 1263 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 PDE2AO00408 941 aaPredicted RBP11.66□□□□□ -0.54
USP53-201ENST00000274030 MARCKSL1P49006 195 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 SFSWAPQ12872 951 aaKnown RBP11.66□□□□□ -0.54
USP53-201ENST00000274030 RRP1BQ14684 758 aaKnown RBP11.66□□□□□ -0.54
USP53-201ENST00000274030 PPM1LQ5SGD2 360 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 MOB2Q70IA6 237 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 PIK3R5Q8WYR1 880 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 WDR18Q9BV38 432 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 NDEL1Q9GZM8 345 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 RIBC2Q9H4K1 309 aa11.66□□□□□ -0.54
USP53-201ENST00000274030 AVENQ9NQS1 362 aaPredicted RBP11.66□□□□□ -0.54
USP53-201ENST00000274030 FBXO6Q9NRD1 293 aaPredicted RBP11.66□□□□□ -0.54
USP53-201ENST00000274030 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.66□□□□□ -0.54
USP53-201ENST00000274030 FAM220BPB1ANY3 271 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 NTRK1P04629 796 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 KRT20P35900 424 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 OAZ1P54368 228 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 NEPROQ6NW34 567 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 GATAD2AQ86YP4 633 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 GPSM1Q86YR5 675 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 SLC41A1Q8IVJ1 513 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 LZTR1Q8N653 840 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 RSPH1Q8WYR4 309 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 WNT8BQ93098 351 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 PPP1R14AQ96A00 147 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 DTNBP1Q96EV8 351 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 BBS4Q96RK4 519 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 KLHL28Q9NXS3 571 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 SPG21Q9NZD8 308 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 FAM25AB3EWG3 89 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 FAM25CB3EWG5 89 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 FAM25GB3EWG6 89 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 ZMPSTE24O75844 475 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 TRUB2O95900 331 aaKnown RBP11.65□□□□□ -0.54
USP53-201ENST00000274030 TGM3Q08188 693 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 CRY1Q16526 586 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 AHSPQ9NZD4 102 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 A0A0B4J269 797 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 PIPSLA2A3N6 862 aa11.65□□□□□ -0.54
USP53-201ENST00000274030 CES2O00748 559 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms