RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 DNMT3LQ9UJW3 386 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 PLXNA4Q9HCM2 1894 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 NYNRINQ9P2P1 1898 aaKnown RBP16.9■□□□□ 0.3
USP4-201ENST00000265560 A0A087WUV0 522 aaPredicted RBP16.9■□□□□ 0.3
USP4-201ENST00000265560 FAM155BO75949 473 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 ATP2A2P16615 1042 aaKnown RBP16.9■□□□□ 0.3
USP4-201ENST00000265560 CTNNB1P35222 781 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 CYP4F8P98187 520 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 PPIGQ13427 754 aaKnown RBP eCLIP16.9■□□□□ 0.35e-7■■■□□ 17.5
USP4-201ENST00000265560 STXBP5Q5T5C0 1151 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 HERC6Q8IVU3 1022 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 SRRM1Q8IYB3 904 aaKnown RBP16.9■□□□□ 0.3
USP4-201ENST00000265560 LGI2Q8N0V4 545 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 EXOC4Q96A65 974 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 TTLL2Q9BWV7 592 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 ATXN3LQ9H3M9 355 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 CATSPERBQ9H7T0 1116 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 ENTPD7Q9NQZ7 604 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 INSL6Q9Y581 213 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 TEX264Q9Y6I9 313 aa16.9■□□□□ 0.3
USP4-201ENST00000265560 EFCAB14O75071 495 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 PSEN1P49768 467 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 SGSHP51688 502 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 MAXP61244 160 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 TMEM150AQ86TG1 271 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 EXOC3L1Q86VI1 746 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 ARL14EPQ8N8R7 260 aaPredicted RBP16.89■□□□□ 0.29
USP4-201ENST00000265560 ATP6V0D2Q8N8Y2 350 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 OR52K1Q8NGK4 314 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 ARHGEF2Q92974 986 aaKnown RBP16.89■□□□□ 0.29
USP4-201ENST00000265560 PABPC5Q96DU9 382 aaKnown RBP16.89■□□□□ 0.29
USP4-201ENST00000265560 HMCESQ96FZ2 354 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 XPO6Q96QU8 1125 aaKnown RBP16.89■□□□□ 0.29
USP4-201ENST00000265560 CAPS2Q9BXY5 557 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 SLC17A6Q9P2U8 582 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 ZC3H7BQ9UGR2 993 aaKnown RBP16.89■□□□□ 0.29
USP4-201ENST00000265560 RABGEF1Q9UJ41 708 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 COL4A4P53420 1690 aaPredicted RBP16.89■□□□□ 0.29
USP4-201ENST00000265560 ARHGAP42A6NI28 874 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 MAFKO60675 156 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 CSH1P0DML2 217 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 CSH2P0DML3 217 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 CCNB1P14635 433 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 MGAT1P26572 445 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 ETFBP38117 255 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 ZXDBP98169 803 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 TRMT10BQ6PF06 316 aaKnown RBP16.89■□□□□ 0.29
USP4-201ENST00000265560 LRRC31Q6UY01 552 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 RELL1Q8IUW5 271 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 RTL3Q8N8U3 475 aaKnown RBP16.89■□□□□ 0.29
USP4-201ENST00000265560 HDAC11Q96DB2 347 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 FAM107BQ9H098 131 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 PLAC1Q9HBJ0 212 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 SLC12A6Q9UHW9 1150 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 MYOFQ9NZM1 2061 aa16.89■□□□□ 0.29
USP4-201ENST00000265560 TCRBV9S1A1TA0A576 114 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 E7ESA3 106 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 UGT1A9O60656 530 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 OPHN1O60890 802 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 GJB3O75712 270 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 SLC2A3P11169 496 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 MX2P20592 715 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 SEMA5AQ13591 1074 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 LRRC14Q15048 493 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 TEX44Q53QW1 395 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 TPGS2Q68CL5 300 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 MICALCLQ6ZW33 695 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 ZNF771Q7L3S4 317 aaPredicted RBP16.88■□□□□ 0.29
USP4-201ENST00000265560 CTAGE3PQ8IX95 158 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 ATP11CQ8NB49 1132 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 TLCD1Q96CP7 247 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 KLF6Q99612 283 aaPredicted RBP16.88■□□□□ 0.29
USP4-201ENST00000265560 FOXP3Q9BZS1 431 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 SMG9Q9H0W8 520 aaKnown RBP16.88■□□□□ 0.29
USP4-201ENST00000265560 ZBP1Q9H171 429 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 UGT1A7Q9HAW7 530 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 UGT1A10Q9HAW8 530 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 UGT1A8Q9HAW9 530 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.88■□□□□ 0.29
USP4-201ENST00000265560 ANAPC1Q9H1A4 1944 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 RFPL2O75678 378 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 ACVRL1P37023 503 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 PPP2R2AP63151 447 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 VEPH1Q14D04 833 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 KBTBD12Q3ZCT8 623 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 ZNF697Q5TEC3 545 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 AGBL2Q5U5Z8 902 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 ZNF683Q8IZ20 524 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 OR52K2Q8NGK3 314 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 ZSCAN18Q8TBC5 510 aaPredicted RBP16.88■□□□□ 0.29
USP4-201ENST00000265560 PGM2Q96G03 612 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 FERMT1Q9BQL6 677 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 ZYG11BQ9C0D3 744 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 KCNK9Q9NPC2 374 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 OLA1Q9NTK5 396 aaKnown RBP16.88■□□□□ 0.29
USP4-201ENST00000265560 HCFC1R1Q9NWW0 138 aa16.88■□□□□ 0.29
USP4-201ENST00000265560 IPO11Q9UI26 975 aaKnown RBP16.88■□□□□ 0.29
USP4-201ENST00000265560 A0A0D9SEW6 157 aa16.87■□□□□ 0.29
USP4-201ENST00000265560 CXorf49A8MYA2 514 aaPredicted RBP16.87■□□□□ 0.29
USP4-201ENST00000265560 GOLGA8RI6L899 631 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms