RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 TEKT5Q96M29 485 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 ACOT9Q9Y305 439 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 POMCP01189 267 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 RAG1P15918 1043 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 ADRA2BP18089 450 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 TMEM121Q9BTD3 319 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 SCN2BO60939 215 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 LDLRP01130 860 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 CPA3P15088 417 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 IDH2P48735 452 aaKnown RBP11.57□□□□□ -0.56
PTPN4-201ENST00000263708 LHX1P48742 406 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 CYP2R1Q6VVX0 501 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 MCEMP1Q8IX19 187 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 ACTRT2Q8TDY3 377 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 TMEM39AQ9NV64 488 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 GSAPA4D1B5 854 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 RGS1Q08116 209 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 RABL6Q3YEC7 729 aaPredicted RBP11.57□□□□□ -0.56
PTPN4-201ENST00000263708 RNASE12Q5GAN4 147 aaKnown RBP11.57□□□□□ -0.56
PTPN4-201ENST00000263708 PAGE2BQ5JRK9 111 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 EFCAB3Q8N7B9 438 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 PPP1R16AQ96I34 528 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 A0A0A6YYK5 440 aaPredicted RBP11.57□□□□□ -0.56
PTPN4-201ENST00000263708 TFPIP10646 304 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 KCNMA1Q12791 1236 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 PPIL2Q13356 520 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 NECTIN1Q15223 517 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 CEP68Q76N32 757 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 COLGALT1Q8NBJ5 622 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 FAM98AQ8NCA5 519 aaKnown RBP11.57□□□□□ -0.56
PTPN4-201ENST00000263708 ITCHQ96J02 903 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 EXOC2Q96KP1 924 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 TTLL2Q9BWV7 592 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 TRIM9Q9C026 710 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 PIH1D1Q9NWS0 290 aaKnown RBP11.57□□□□□ -0.56
PTPN4-201ENST00000263708 ARL15Q9NXU5 204 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 GIT1Q9Y2X7 761 aa11.57□□□□□ -0.56
PTPN4-201ENST00000263708 TCOF1Q13428 1488 aaKnown RBP11.57□□□□□ -0.56
PTPN4-201ENST00000263708 CNTFP26441 200 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 OR56A4Q8NGH8 313 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 ZNF563Q8TA94 476 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 SYT15Q9BQS2 421 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 TRIM2Q9C040 744 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.56□□□□□ -0.569e-7■■■■□ 19.6
PTPN4-201ENST00000263708 DCLK1O15075 740 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 AVILO75366 819 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 DBIP07108 87 aaKnown RBP11.56□□□□□ -0.56
PTPN4-201ENST00000263708 ZNF7P17097 686 aaPredicted RBP11.56□□□□□ -0.56
PTPN4-201ENST00000263708 ALDH3A2P51648 485 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 SEC24CP53992 1094 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 ACAP2Q15057 778 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 ATCAYQ86WG3 371 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 OSBPL5Q9H0X9 879 aaPredicted RBP11.56□□□□□ -0.56
PTPN4-201ENST00000263708 STOML2Q9UJZ1 356 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 TBX4P57082 545 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 USP45Q70EL2 814 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 CXXC5Q7LFL8 322 aaKnown RBP11.56□□□□□ -0.56
PTPN4-201ENST00000263708 ERO1BQ86YB8 467 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 OR6Y1Q8NGX8 325 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 HGH1Q9BTY7 390 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 SPATA9Q9BWV2 254 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 C8orf4Q9NR00 106 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 IRAK3Q9Y616 596 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 SERPINF2P08697 491 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 CCNYL3P0C7X3 344 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 UBA1P22314 1058 aaKnown RBP11.56□□□□□ -0.56
PTPN4-201ENST00000263708 FAM131BQ86XD5 332 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 GPSM1Q86YR5 675 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 ZDHHC13Q8IUH4 622 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 CLVS1Q8IUQ0 354 aaPredicted RBP11.56□□□□□ -0.56
PTPN4-201ENST00000263708 STARD8Q92502 1023 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 GSDMCQ9BYG8 508 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 CRISPLD1Q9H336 500 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 CHMP1AQ9HD42 196 aaPredicted RBP11.56□□□□□ -0.56
PTPN4-201ENST00000263708 CKLFQ9UBR5 152 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 TBC1D24Q9ULP9 559 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 ATP10BO94823 1461 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 TPD52L2O43399 206 aaKnown RBP11.56□□□□□ -0.56
PTPN4-201ENST00000263708 RLN1P04808 185 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 TCF4P15884 667 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 PPP2R2BQ00005 443 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 RBM43Q6ZSC3 357 aaKnown RBP11.56□□□□□ -0.56
PTPN4-201ENST00000263708 RASGEF1AQ8N9B8 481 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 CXorf40BQ96DE9 158 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 GANQ9H2C0 597 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 POMKQ9H5K3 350 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 RBM22Q9NW64 420 aaKnown RBP eCLIP11.56□□□□□ -0.56
PTPN4-201ENST00000263708 CCDC167Q9P0B6 97 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 TMEM94Q12767 1356 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 TRIM66O15016 1216 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 TOP3BO95985 862 aaKnown RBP11.56□□□□□ -0.56
PTPN4-201ENST00000263708 F9P00740 461 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 S100A3P33764 101 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 UGT1A5P35504 534 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 FATE1Q969F0 183 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 MYLPFQ96A32 169 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 JSRP1Q96MG2 331 aaPredicted RBP11.56□□□□□ -0.56
PTPN4-201ENST00000263708 PSME2Q9UL46 239 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 TP73O15350 636 aa11.56□□□□□ -0.56
PTPN4-201ENST00000263708 MYBL2P10244 700 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms