RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 V9GYQ6 96 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 SH3PXD2BA1X283 911 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 RGSL1A5PLK6 1076 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 ZNF839A8K0R7 811 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 PHGDHO43175 533 aaKnown RBP14.67□□□□□ -0.06
SDC1-201ENST00000254351 CAP2P40123 477 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 ZNF132P52740 706 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 TFDP2Q14188 446 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 EPGNQ6UW88 154 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 C16orf89Q6UX73 402 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 DCLK2Q8N568 766 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 CDKL2Q92772 493 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 ASNSD1Q9NWL6 643 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 AP4S1Q9Y587 144 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 SPTLC1O15269 473 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 PIGNO95427 931 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 MT-ND1P03886 318 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 IL4RP24394 825 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 HALP42357 657 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 CD97P48960 835 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 EIF2B2P49770 351 aaKnown RBP14.67□□□□□ -0.06
SDC1-201ENST00000254351 CDK9P50750 372 aaKnown RBP14.67□□□□□ -0.06
SDC1-201ENST00000254351 HSD17B4P51659 736 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 TGFB2P61812 414 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 KRT76Q01546 638 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 ITGA7Q13683 1181 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 TGFBIQ15582 683 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 ANO4Q32M45 955 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 PIGGQ5H8A4 983 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 ZBTB49Q6ZSB9 765 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 TMEM26Q6ZUK4 368 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 TMEM192Q8IY95 271 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 NIPA2Q8N8Q9 360 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 ADCY4Q8NFM4 1077 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 CYGBQ8WWM9 190 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 ATP6V0A1Q93050 837 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 ISOC1Q96CN7 298 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 IDI2Q9BXS1 227 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 PLGRKTQ9HBL7 147 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 SYBUQ9NX95 663 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 TSC22D4Q9Y3Q8 395 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 BPTFQ12830 3046 aa14.67□□□□□ -0.06
SDC1-201ENST00000254351 PAPSS1O43252 624 aaPredicted RBP14.66□□□□□ -0.06
SDC1-201ENST00000254351 MICAL2O94851 1124 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 LSM8O95777 96 aaKnown RBP14.66□□□□□ -0.06
SDC1-201ENST00000254351 ICAM1P05362 532 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 ZNF26P17031 533 aaPredicted RBP14.66□□□□□ -0.06
SDC1-201ENST00000254351 TAP1Q03518 808 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 RELAQ04206 551 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 TTC33Q6PID6 262 aaPredicted RBP14.66□□□□□ -0.06
SDC1-201ENST00000254351 RAVER1Q8IY67 606 aaKnown RBP14.66□□□□□ -0.06
SDC1-201ENST00000254351 PYROXD2Q8N2H3 581 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 MCPH1Q8NEM0 835 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 GATA5Q9BWX5 397 aaPredicted RBP14.66□□□□□ -0.06
SDC1-201ENST00000254351 PNPLA8Q9NP80 782 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 CCDC167Q9P0B6 97 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 TRIM17Q9Y577 477 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 CDY2AQ9Y6F7 541 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 CDY1Q9Y6F8 540 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 RBM47A0AV96 593 aaKnown RBP14.66□□□□□ -0.06
SDC1-201ENST00000254351 KCNH1O95259 989 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 ZNF23P17027 643 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 UGT1A1P22309 533 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 UGT1A4P22310 534 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 UGT1A3P35503 534 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 UGT1A5P35504 534 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 ITGADQ13349 1161 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 ZNF460Q14592 562 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 ARL13AQ5H913 290 aaPredicted RBP14.66□□□□□ -0.06
SDC1-201ENST00000254351 C6orf183Q5T699 404 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 LRRC8EQ6NSJ5 796 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 STRA8Q7Z7C7 330 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 SLC7A5P1Q8MH63 180 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 LRRC71Q8N4P6 559 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 NLRP4Q96MN2 994 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 LPIN3Q9BQK8 851 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 TASP1Q9H6P5 420 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 TMPRSS4Q9NRS4 437 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 TBC1D23Q9NUY8 699 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 OLAHQ9NV23 265 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 DCDC2Q9UHG0 476 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 ANKRD12Q6UB98 2062 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 A0A096LPK6 155 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 C1orf232A0A0U1RR37 186 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 FUCA1P04066 466 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 MCF2P10911 925 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 TPH1P17752 444 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 GRK2P25098 689 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 SERPINB9P50453 376 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 ESRRGP62508 458 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 TRAF2Q12933 501 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 IKBKEQ14164 716 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 HEATR6Q6AI08 1181 aaKnown RBP14.66□□□□□ -0.06
SDC1-201ENST00000254351 EEPD1Q7L9B9 569 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 HERC6Q8IVU3 1022 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 ZDHHC2Q9UIJ5 367 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 SLC39A10Q9ULF5 831 aa14.66□□□□□ -0.06
SDC1-201ENST00000254351 E7ENX8 843 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 ADAM23O75077 832 aa14.65□□□□□ -0.06
SDC1-201ENST00000254351 LYPLA2O95372 231 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms