RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 KCNK16Q96T55 309 aa12.69□□□□□ -0.38
NUP88-201ENST00000225696 PKP2Q99959 881 aa12.69□□□□□ -0.38
NUP88-201ENST00000225696 FDXACB1Q9BRP7 624 aaPredicted RBP12.69□□□□□ -0.38
NUP88-201ENST00000225696 GATA5Q9BWX5 397 aaPredicted RBP12.69□□□□□ -0.38
NUP88-201ENST00000225696 GCOM2Q9BZD3 368 aaPredicted RBP12.69□□□□□ -0.38
NUP88-201ENST00000225696 RBM38Q9H0Z9 239 aaKnown RBP12.69□□□□□ -0.38
NUP88-201ENST00000225696 TCF7L2Q9NQB0 619 aa12.69□□□□□ -0.38
NUP88-201ENST00000225696 CCDC160A6NGH7 325 aa12.68□□□□□ -0.38
NUP88-201ENST00000225696 KCNK1O00180 336 aa12.68□□□□□ -0.38
NUP88-201ENST00000225696 IRF6O14896 467 aa12.68□□□□□ -0.38
NUP88-201ENST00000225696 ARSAP15289 507 aa12.68□□□□□ -0.38
NUP88-201ENST00000225696 ARF4P18085 180 aaPredicted RBP12.68□□□□□ -0.38
NUP88-201ENST00000225696 TCN1P20061 433 aaPredicted RBP12.68□□□□□ -0.38
NUP88-201ENST00000225696 ATICP31939 592 aa12.68□□□□□ -0.38
NUP88-201ENST00000225696 RPL5P46777 297 aaKnown RBP12.68□□□□□ -0.38
NUP88-201ENST00000225696 NUMBP49757 651 aa12.68□□□□□ -0.38
NUP88-201ENST00000225696 DLK2Q6UY11 383 aa12.68□□□□□ -0.38
NUP88-201ENST00000225696 STRA8Q7Z7C7 330 aa12.68□□□□□ -0.38
NUP88-201ENST00000225696 TICAM1Q8IUC6 712 aa12.68□□□□□ -0.38
NUP88-201ENST00000225696 MICALL2Q8IY33 904 aa12.68□□□□□ -0.38
NUP88-201ENST00000225696 ZNF567Q8N184 647 aa12.68□□□□□ -0.38
NUP88-201ENST00000225696 KBTBD7Q8WVZ9 684 aa12.68□□□□□ -0.38
NUP88-201ENST00000225696 CENPIQ92674 756 aaPredicted RBP12.68□□□□□ -0.38
NUP88-201ENST00000225696 RCN3Q96D15 328 aa12.68□□□□□ -0.38
NUP88-201ENST00000225696 KLHL32Q96NJ5 620 aa12.68□□□□□ -0.38
NUP88-201ENST00000225696 PRPF18Q99633 342 aaKnown RBP12.68□□□□□ -0.38
NUP88-201ENST00000225696 SENP6Q9GZR1 1112 aaPredicted RBP12.68□□□□□ -0.38
NUP88-201ENST00000225696 AS3MTQ9HBK9 375 aa12.68□□□□□ -0.38
NUP88-201ENST00000225696 HOXC10Q9NYD6 342 aa12.68□□□□□ -0.38
NUP88-201ENST00000225696 ZNF112Q9UJU3 913 aa12.68□□□□□ -0.38
NUP88-201ENST00000225696 DOCK1Q14185 1865 aa12.68□□□□□ -0.38
NUP88-201ENST00000225696 CEP350Q5VT06 3117 aa12.68□□□□□ -0.38
NUP88-201ENST00000225696 SYNJ2BP-COX16A0A087WUM0 186 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 A0A096LPK6 155 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 CCDC78A2IDD5 438 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 TK2O00142 265 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 SOCS7O14512 581 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 ATP9BO43861 1147 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 SBK3P0C264 359 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 SRGAP2BP0DMP2 458 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 MLNP12872 115 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 P4HA1P13674 534 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 CCDC130P13994 396 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 MX2P20592 715 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 GP5P40197 560 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 NR2C2P49116 596 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 FLOT2Q14254 428 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 PDK1Q15118 436 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 INSCQ1MX18 579 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 HSP90AA5PQ58FG0 334 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 PIGGQ5H8A4 983 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 C4orf22Q6V702 233 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 PTAR1Q7Z6K3 402 aaPredicted RBP12.67□□□□□ -0.38
NUP88-201ENST00000225696 CCNYQ8ND76 341 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 BHLHE22Q8NFJ8 381 aaPredicted RBP12.67□□□□□ -0.38
NUP88-201ENST00000225696 PIP4K2CQ8TBX8 421 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 GRIN3AQ8TCU5 1115 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 MFSD3Q96ES6 412 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 NUF2Q9BZD4 464 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 EPB41L1Q9H4G0 881 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 COX16Q9P0S2 106 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 TXNDC16Q9P2K2 825 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 GNEQ9Y223 722 aaKnown RBP12.67□□□□□ -0.38
NUP88-201ENST00000225696 HEMK1Q9Y5R4 338 aaPredicted RBP12.67□□□□□ -0.38
NUP88-201ENST00000225696 CDY2AQ9Y6F7 541 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 CDY1Q9Y6F8 540 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 NOP56O00567 594 aaKnown RBP12.67□□□□□ -0.38
NUP88-201ENST00000225696 VTNP04004 478 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 NELFEP18615 380 aaKnown RBP12.67□□□□□ -0.38
NUP88-201ENST00000225696 MAGEA12P43365 314 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 ZNF280AP59817 542 aaPredicted RBP12.67□□□□□ -0.38
NUP88-201ENST00000225696 ADGRE1Q14246 886 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 FSCBQ5H9T9 825 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 TMEM151AQ8N4L1 468 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 FAM167AQ96KS9 214 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 CATSPER2Q96P56 530 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 RBBP8Q99708 897 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 UNKQ9C0B0 810 aaKnown RBP12.67□□□□□ -0.38
NUP88-201ENST00000225696 PRDM12Q9H4Q4 367 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 GALNT8Q9NY28 637 aa12.67□□□□□ -0.38
NUP88-201ENST00000225696 C6orf203Q9P0P8 240 aaPredicted RBP12.67□□□□□ -0.38
NUP88-201ENST00000225696 ZCWPW2A0A1B0GU75 182 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 MATN2O00339 956 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 GRID2O43424 1007 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 C2P06681 752 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 PDGFRBP09619 1106 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 ENO3P13929 434 aaPredicted RBP12.66□□□□□ -0.38
NUP88-201ENST00000225696 PTPN1P18031 435 aaKnown RBP12.66□□□□□ -0.38
NUP88-201ENST00000225696 ADORA2BP29275 332 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 PRDX6P30041 224 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 GLRBP48167 497 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 OLFML2BQ68BL8 750 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 FAM43BQ6ZT52 329 aaPredicted RBP12.66□□□□□ -0.38
NUP88-201ENST00000225696 CLEC14AQ86T13 490 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 KYQ8NBH2 561 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 ZSCAN18Q8TBC5 510 aaPredicted RBP12.66□□□□□ -0.38
NUP88-201ENST00000225696 ZNF669Q96BR6 464 aaPredicted RBP12.66□□□□□ -0.38
NUP88-201ENST00000225696 LENG1Q96BZ8 264 aaPredicted RBP12.66□□□□□ -0.38
NUP88-201ENST00000225696 SPATA33Q96N06 139 aa12.66□□□□□ -0.38
NUP88-201ENST00000225696 ZMAT2Q96NC0 199 aaKnown RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms