RNA–Protein interactions for RNA: ENST00000641371.1

PHGDH-215, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 725 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-215ENST00000641371 ADAMTS8Q9UP79 889 aa12.89□□□□□ -0.35
PHGDH-215ENST00000641371 SHPRHQ149N8 1683 aa12.89□□□□□ -0.35
PHGDH-215ENST00000641371 GGNBP2Q9H3C7 697 aa12.88□□□□□ -0.35
PHGDH-215ENST00000641371 ACEP12821 1306 aa12.88□□□□□ -0.35
PHGDH-215ENST00000641371 PNPLA6Q8IY17 1366 aa12.87□□□□□ -0.35
PHGDH-215ENST00000641371 DCCP43146 1447 aa12.87□□□□□ -0.35
PHGDH-215ENST00000641371 USP54Q70EL1 1684 aa12.86□□□□□ -0.35
PHGDH-215ENST00000641371 CDK12Q9NYV4 1490 aaPredicted RBP12.86□□□□□ -0.35
PHGDH-215ENST00000641371 SSH2Q76I76 1423 aa12.86□□□□□ -0.35
PHGDH-215ENST00000641371 TTC21BQ7Z4L5 1316 aa12.86□□□□□ -0.35
PHGDH-215ENST00000641371 NCKAP5LQ9HCH0 1330 aa12.86□□□□□ -0.35
PHGDH-215ENST00000641371 MAP2P11137 1827 aaKnown RBP12.85□□□□□ -0.35
PHGDH-215ENST00000641371 USP31Q70CQ4 1352 aa12.85□□□□□ -0.35
PHGDH-215ENST00000641371 NGDNQ8NEJ9 315 aaKnown RBP12.85□□□□□ -0.35
PHGDH-215ENST00000641371 OVOS2A0A0J9YW53 1432 aa12.85□□□□□ -0.35
PHGDH-215ENST00000641371 OVOS2Q6IE36 1432 aa12.85□□□□□ -0.35
PHGDH-215ENST00000641371 COL3A1P02461 1466 aaPredicted RBP12.85□□□□□ -0.35
PHGDH-215ENST00000641371 RGPD8O14715 1765 aaPredicted RBP12.84□□□□□ -0.35
PHGDH-215ENST00000641371 KIF1AQ12756 1690 aa12.84□□□□□ -0.35
PHGDH-215ENST00000641371 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.84□□□□□ -0.35
PHGDH-215ENST00000641371 RUNDC1Q96C34 613 aa12.84□□□□□ -0.35
PHGDH-215ENST00000641371 KIF24Q5T7B8 1368 aa12.83□□□□□ -0.36
PHGDH-215ENST00000641371 TNNT2P45379 298 aaPredicted RBP12.83□□□□□ -0.36
PHGDH-215ENST00000641371 LMTK3Q96Q04 1460 aa12.83□□□□□ -0.36
PHGDH-215ENST00000641371 DIAPH1O60610 1272 aaKnown RBP12.82□□□□□ -0.36
PHGDH-215ENST00000641371 NEFMP07197 916 aa12.82□□□□□ -0.36
PHGDH-215ENST00000641371 CCDC27Q2M243 656 aa12.81□□□□□ -0.36
PHGDH-215ENST00000641371 C14orf37Q86TY3 774 aa12.81□□□□□ -0.36
PHGDH-215ENST00000641371 PROSER2Q86WR7 435 aaPredicted RBP12.81□□□□□ -0.36
PHGDH-215ENST00000641371 C19orf44Q9H6X5 657 aa12.81□□□□□ -0.36
PHGDH-215ENST00000641371 GOLGA2Q08379 1002 aa12.8□□□□□ -0.36
PHGDH-215ENST00000641371 NME9Q86XW9 330 aa12.8□□□□□ -0.36
PHGDH-215ENST00000641371 PELP1Q8IZL8 1130 aaKnown RBP12.8□□□□□ -0.36
PHGDH-215ENST00000641371 FBXO41Q8TF61 875 aa12.8□□□□□ -0.36
PHGDH-215ENST00000641371 POLKQ9UBT6 870 aa12.8□□□□□ -0.36
PHGDH-215ENST00000641371 PHF8Q9UPP1 1060 aa12.8□□□□□ -0.36
PHGDH-215ENST00000641371 IQSEC2Q5JU85 1478 aa12.79□□□□□ -0.36
PHGDH-215ENST00000641371 U2AF1L5P0DN76 240 aaPredicted RBP12.79□□□□□ -0.36
PHGDH-215ENST00000641371 U2AF1Q01081 240 aaKnown RBP eCLIP12.79□□□□□ -0.36
PHGDH-215ENST00000641371 ZNF521Q96K83 1311 aa12.79□□□□□ -0.36
PHGDH-215ENST00000641371 E9PSI1 815 aa12.78□□□□□ -0.36
PHGDH-215ENST00000641371 FCHSD2O94868 740 aa12.78□□□□□ -0.36
PHGDH-215ENST00000641371 DMRT2Q9Y5R5 561 aa12.78□□□□□ -0.36
PHGDH-215ENST00000641371 MAPK8IP3Q9UPT6 1336 aa12.78□□□□□ -0.36
PHGDH-215ENST00000641371 PIK3C2AO00443 1686 aa12.77□□□□□ -0.36
PHGDH-215ENST00000641371 APAF1O14727 1248 aa12.77□□□□□ -0.37
PHGDH-215ENST00000641371 CADPS2Q86UW7 1296 aa12.77□□□□□ -0.37
PHGDH-215ENST00000641371 SUPT16HQ9Y5B9 1047 aaKnown RBP12.77□□□□□ -0.37
PHGDH-215ENST00000641371 RNF123Q5XPI4 1314 aa12.77□□□□□ -0.37
PHGDH-215ENST00000641371 STRCQ7RTU9 1775 aa12.76□□□□□ -0.37
PHGDH-215ENST00000641371 NUTM2FA1L443 756 aa12.76□□□□□ -0.37
PHGDH-215ENST00000641371 ATF3P18847 181 aa12.76□□□□□ -0.37
PHGDH-215ENST00000641371 WDR63Q8IWG1 891 aa12.76□□□□□ -0.37
PHGDH-215ENST00000641371 PMFBP1Q8TBY8 1022 aa12.76□□□□□ -0.37
PHGDH-215ENST00000641371 SBNO1A3KN83 1393 aa12.75□□□□□ -0.37
PHGDH-215ENST00000641371 RTL1A6NKG5 1358 aa12.75□□□□□ -0.37
PHGDH-215ENST00000641371 U2SURPO15042 1029 aaKnown RBP12.75□□□□□ -0.37
PHGDH-215ENST00000641371 MSH6P52701 1360 aa12.75□□□□□ -0.37
PHGDH-215ENST00000641371 C1orf167Q5SNV9 1468 aa12.74□□□□□ -0.37
PHGDH-215ENST00000641371 MST1RQ04912 1400 aa12.74□□□□□ -0.37
PHGDH-215ENST00000641371 FLT4P35916 1363 aa12.74□□□□□ -0.37
PHGDH-215ENST00000641371 TMEM94Q12767 1356 aa12.74□□□□□ -0.37
PHGDH-215ENST00000641371 FKBP8Q14318 412 aa12.74□□□□□ -0.37
PHGDH-215ENST00000641371 CCDC146Q8IYE0 955 aa12.74□□□□□ -0.37
PHGDH-215ENST00000641371 KCNH5Q8NCM2 988 aa12.74□□□□□ -0.37
PHGDH-215ENST00000641371 PHF23Q9BUL5 403 aaPredicted RBP12.74□□□□□ -0.37
PHGDH-215ENST00000641371 CALD1Q05682 793 aaKnown RBP12.73□□□□□ -0.37
PHGDH-215ENST00000641371 PSME1Q06323 249 aa12.73□□□□□ -0.37
PHGDH-215ENST00000641371 SLFN5Q08AF3 891 aa12.73□□□□□ -0.37
PHGDH-215ENST00000641371 ESCO1Q5FWF5 840 aa12.73□□□□□ -0.37
PHGDH-215ENST00000641371 TCP11L2Q8N4U5 519 aa12.73□□□□□ -0.37
PHGDH-215ENST00000641371 RCAN3Q9UKA8 241 aa12.73□□□□□ -0.37
PHGDH-215ENST00000641371 STRCP1A6NGW2 1772 aa12.73□□□□□ -0.37
PHGDH-215ENST00000641371 IL16Q14005 1332 aa12.72□□□□□ -0.37
PHGDH-215ENST00000641371 IL13P35225 146 aa12.72□□□□□ -0.37
PHGDH-215ENST00000641371 NLRP6P59044 892 aa12.72□□□□□ -0.37
PHGDH-215ENST00000641371 LMOD3Q0VAK6 560 aa12.72□□□□□ -0.37
PHGDH-215ENST00000641371 WWC1Q8IX03 1113 aa12.72□□□□□ -0.37
PHGDH-215ENST00000641371 TRMT2AQ8IZ69 625 aaKnown RBP12.72□□□□□ -0.37
PHGDH-215ENST00000641371 PLEKHF1Q96S99 279 aa12.72□□□□□ -0.37
PHGDH-215ENST00000641371 SALL2Q9Y467 1007 aaPredicted RBP12.72□□□□□ -0.37
PHGDH-215ENST00000641371 PHRF1Q9P1Y6 1649 aaKnown RBP12.72□□□□□ -0.37
PHGDH-215ENST00000641371 PPM1GO15355 546 aaPredicted RBP12.71□□□□□ -0.37
PHGDH-215ENST00000641371 CT47B1P0C2W7 299 aaPredicted RBP12.71□□□□□ -0.37
PHGDH-215ENST00000641371 ABTB2Q8N961 1025 aa12.71□□□□□ -0.37
PHGDH-215ENST00000641371 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.71□□□□□ -0.37
PHGDH-215ENST00000641371 MYH16Q9H6N6 1097 aa12.71□□□□□ -0.37
PHGDH-215ENST00000641371 EMILIN1Q9Y6C2 1016 aa12.71□□□□□ -0.37
PHGDH-215ENST00000641371 ARHGEF10O15013 1369 aa12.7□□□□□ -0.38
PHGDH-215ENST00000641371 HSPA2P54652 639 aa12.7□□□□□ -0.38
PHGDH-215ENST00000641371 DUSP27Q5VZP5 1158 aa12.7□□□□□ -0.38
PHGDH-215ENST00000641371 MARF1Q9Y4F3 1742 aaKnown RBP12.7□□□□□ -0.38
PHGDH-215ENST00000641371 NPHP3Q7Z494 1330 aa12.69□□□□□ -0.38
PHGDH-215ENST00000641371 TRPM3Q9HCF6 1732 aaPredicted RBP12.69□□□□□ -0.38
PHGDH-215ENST00000641371 TMPOP42166 694 aaKnown RBP12.69□□□□□ -0.38
PHGDH-215ENST00000641371 RSPH6AQ9H0K4 717 aa12.69□□□□□ -0.38
PHGDH-215ENST00000641371 ZRANB1Q9UGI0 708 aa12.69□□□□□ -0.38
PHGDH-215ENST00000641371 RGPD1P0DJD0 1748 aa12.68□□□□□ -0.38
PHGDH-215ENST00000641371 PAK3O75914 559 aaPredicted RBP12.68□□□□□ -0.38
PHGDH-215ENST00000641371 AMPHP49418 695 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms