RNA–Protein interactions for RNA: ENST00000640931.1

RTTN-223, Transcript of rotatin, human

TSL 5

Gene RTTN, Length 2,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTTN-223	ENST00000640931	RALBP1	Q15311	655 aa		10.15	□□□□□ -0.78
RTTN-223	ENST00000640931	ZNF622	Q969S3	477 aa	Known RBP eCLIP	10.15	□□□□□ -0.78
RTTN-223	ENST00000640931	CARD14	Q9BXL6	1004 aa		10.15	□□□□□ -0.78
RTTN-223	ENST00000640931	CCDC9	Q9Y3X0	531 aa	Known RBP	10.15	□□□□□ -0.78
RTTN-223	ENST00000640931	PIK3C2B	O00750	1634 aa		10.15	□□□□□ -0.78
RTTN-223	ENST00000640931	ZMYM4	Q5VZL5	1548 aa		10.15	□□□□□ -0.79
RTTN-223	ENST00000640931	VGLL3	A8MV65	326 aa		10.14	□□□□□ -0.79
RTTN-223	ENST00000640931	NEXMIF	Q5QGS0	1516 aa		10.14	□□□□□ -0.79
RTTN-223	ENST00000640931	PTMS	P20962	102 aa		10.14	□□□□□ -0.79
RTTN-223	ENST00000640931	GTPBP4	Q9BZE4	634 aa	Known RBP	10.14	□□□□□ -0.79
RTTN-223	ENST00000640931	ZBED9	Q6R2W3	1325 aa		10.13	□□□□□ -0.79
RTTN-223	ENST00000640931	LETM1	O95202	739 aa	Predicted RBP	10.13	□□□□□ -0.79
RTTN-223	ENST00000640931	SLC12A5	Q9H2X9	1139 aa		10.13	□□□□□ -0.79
RTTN-223	ENST00000640931	ADGRB1	O14514	1584 aa		10.13	□□□□□ -0.79
RTTN-223	ENST00000640931	TPRN	Q4KMQ1	711 aa		10.13	□□□□□ -0.79
RTTN-223	ENST00000640931	MYOM1	P52179	1685 aa		10.13	□□□□□ -0.79
RTTN-223	ENST00000640931	CLTC	Q00610	1675 aa	Known RBP	10.13	□□□□□ -0.79
RTTN-223	ENST00000640931	NEURL4	Q96JN8	1562 aa		10.12	□□□□□ -0.79
RTTN-223	ENST00000640931	PREX1	Q8TCU6	1659 aa		10.12	□□□□□ -0.79
RTTN-223	ENST00000640931	HMGB1	P09429	215 aa	Known RBP	10.12	□□□□□ -0.79
RTTN-223	ENST00000640931	FAM193A	P78312	1265 aa		10.12	□□□□□ -0.79
RTTN-223	ENST00000640931	KNSTRN	Q9Y448	316 aa		10.12	□□□□□ -0.79
RTTN-223	ENST00000640931	ARHGAP31	Q2M1Z3	1444 aa		10.12	□□□□□ -0.79
RTTN-223	ENST00000640931	SLC20A2	Q08357	652 aa		10.11	□□□□□ -0.79
RTTN-223	ENST00000640931	NLRP13	Q86W25	1043 aa		10.11	□□□□□ -0.79
RTTN-223	ENST00000640931	CABP2	Q9NPB3	220 aa		10.11	□□□□□ -0.79
RTTN-223	ENST00000640931	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	10.11	□□□□□ -0.79
RTTN-223	ENST00000640931	BRD4	O60885	1362 aa	Predicted RBP	10.11	□□□□□ -0.79
RTTN-223	ENST00000640931	KIAA1210	Q9ULL0	1709 aa		10.11	□□□□□ -0.79
RTTN-223	ENST00000640931	MYCN	P04198	464 aa	Predicted RBP	10.11	□□□□□ -0.79
RTTN-223	ENST00000640931	PPP2R1A	P30153	589 aa		10.11	□□□□□ -0.79
RTTN-223	ENST00000640931	CEBPA	P49715	358 aa	Predicted RBP	10.11	□□□□□ -0.79
RTTN-223	ENST00000640931	STAG3	Q9UJ98	1225 aa		10.11	□□□□□ -0.79
RTTN-223	ENST00000640931	HDAC5	Q9UQL6	1122 aa		10.11	□□□□□ -0.79
RTTN-223	ENST00000640931	LRPPRC	P42704	1394 aa	Known RBP	10.11	□□□□□ -0.79
RTTN-223	ENST00000640931	ASXL1	Q8IXJ9	1541 aa		10.11	□□□□□ -0.79
RTTN-223	ENST00000640931	EIF3A	Q14152	1382 aa	Known RBP	10.1	□□□□□ -0.79
RTTN-223	ENST00000640931	DNTTIP2	Q5QJE6	756 aa	Known RBP	10.1	□□□□□ -0.79
RTTN-223	ENST00000640931	CDCA7L	Q96GN5	454 aa		10.1	□□□□□ -0.79
RTTN-223	ENST00000640931	TMEM131L	A2VDJ0	1609 aa		10.1	□□□□□ -0.79
RTTN-223	ENST00000640931	RPGRIP1L	Q68CZ1	1315 aa		10.09	□□□□□ -0.79
RTTN-223	ENST00000640931	GOLGA6L3	A6NEY3	463 aa		10.09	□□□□□ -0.79
RTTN-223	ENST00000640931	MCC	P23508	829 aa		10.09	□□□□□ -0.79
RTTN-223	ENST00000640931	SLC52A1	Q9NWF4	448 aa		10.09	□□□□□ -0.79
RTTN-223	ENST00000640931	MINK1	Q8N4C8	1332 aa	Predicted RBP	10.09	□□□□□ -0.79
RTTN-223	ENST00000640931	TCERG1	O14776	1098 aa	Known RBP	10.08	□□□□□ -0.8
RTTN-223	ENST00000640931	TRIM44	Q96DX7	344 aa	Predicted RBP	10.08	□□□□□ -0.8
RTTN-223	ENST00000640931	ADAMTS8	Q9UP79	889 aa		10.08	□□□□□ -0.8
RTTN-223	ENST00000640931	ZC3H13	Q5T200	1668 aa	Known RBP	10.08	□□□□□ -0.8
RTTN-223	ENST00000640931	CLSTN1	O94985	981 aa		10.08	□□□□□ -0.8
RTTN-223	ENST00000640931	PRDM10	Q9NQV6	1147 aa		10.08	□□□□□ -0.8
RTTN-223	ENST00000640931	QRICH2	Q9H0J4	1663 aa		10.07	□□□□□ -0.8
RTTN-223	ENST00000640931	PSEN1	P49768	467 aa		10.07	□□□□□ -0.8
RTTN-223	ENST00000640931	POLA2	Q14181	598 aa		10.07	□□□□□ -0.8
RTTN-223	ENST00000640931	WAPL	Q7Z5K2	1190 aa		10.07	□□□□□ -0.8
RTTN-223	ENST00000640931	CCDC146	Q8IYE0	955 aa		10.07	□□□□□ -0.8
RTTN-223	ENST00000640931	PRAM1	Q96QH2	718 aa		10.07	□□□□□ -0.8
RTTN-223	ENST00000640931	KDM5A	P29375	1690 aa	Known RBP	10.07	□□□□□ -0.8
RTTN-223	ENST00000640931	ZSCAN20	P17040	1043 aa	Predicted RBP	10.06	□□□□□ -0.8
RTTN-223	ENST00000640931	SETBP1	Q9Y6X0	1596 aa		10.06	□□□□□ -0.8
RTTN-223	ENST00000640931	ZMYM3	Q14202	1370 aa		10.06	□□□□□ -0.8
RTTN-223	ENST00000640931	ARHGEF40	Q8TER5	1519 aa		10.06	□□□□□ -0.8
RTTN-223	ENST00000640931	TULP4	Q9NRJ4	1543 aa		10.06	□□□□□ -0.8
RTTN-223	ENST00000640931	ESPN	B1AK53	854 aa		10.06	□□□□□ -0.8
RTTN-223	ENST00000640931	MS4A1	P11836	297 aa		10.06	□□□□□ -0.8
RTTN-223	ENST00000640931	CDCA8	Q53HL2	280 aa		10.06	□□□□□ -0.8
RTTN-223	ENST00000640931	PLEKHH1	Q9ULM0	1364 aa		10.06	□□□□□ -0.8
RTTN-223	ENST00000640931	AGL	P35573	1532 aa		10.05	□□□□□ -0.8
RTTN-223	ENST00000640931	PHF14	O94880	888 aa		10.05	□□□□□ -0.8
RTTN-223	ENST00000640931	APP	P05067	770 aa		10.05	□□□□□ -0.8
RTTN-223	ENST00000640931	NSD3	Q9BZ95	1437 aa		10.05	□□□□□ -0.8
RTTN-223	ENST00000640931	A2ML1	A8K2U0	1454 aa		10.05	□□□□□ -0.8
RTTN-223	ENST00000640931	MYO3A	Q8NEV4	1616 aa		10.05	□□□□□ -0.8
RTTN-223	ENST00000640931	KIAA1211	Q6ZU35	1233 aa		10.05	□□□□□ -0.8
RTTN-223	ENST00000640931	AKT1S1	Q96B36	256 aa		10.05	□□□□□ -0.8
RTTN-223	ENST00000640931	NUDC	Q9Y266	331 aa		10.05	□□□□□ -0.8
RTTN-223	ENST00000640931	PTPRM	P28827	1452 aa		10.04	□□□□□ -0.8
RTTN-223	ENST00000640931	ARHGEF28	Q8N1W1	1705 aa	Known RBP	10.04	□□□□□ -0.8
RTTN-223	ENST00000640931	PLCD4	Q9BRC7	762 aa		10.04	□□□□□ -0.8
RTTN-223	ENST00000640931	PATL2	C9JE40	543 aa	Known RBP	10.03	□□□□□ -0.8
RTTN-223	ENST00000640931	DNAJC2	Q99543	621 aa	Known RBP	10.03	□□□□□ -0.8
RTTN-223	ENST00000640931	ESF1	Q9H501	851 aa	Known RBP	10.03	□□□□□ -0.8
RTTN-223	ENST00000640931	YY1AP1	Q9H869	796 aa		10.03	□□□□□ -0.8
RTTN-223	ENST00000640931	ZBTB12	Q9Y330	459 aa	Predicted RBP	10.03	□□□□□ -0.8
RTTN-223	ENST00000640931	SMG6	Q86US8	1419 aa	Known RBP	10.03	□□□□□ -0.8
RTTN-223	ENST00000640931	RIMS2	Q9UQ26	1411 aa		10.03	□□□□□ -0.8
RTTN-223	ENST00000640931	RIPK4	P57078	832 aa		10.03	□□□□□ -0.8
RTTN-223	ENST00000640931	SRPK2	P78362	688 aa	Known RBP	10.03	□□□□□ -0.8
RTTN-223	ENST00000640931	BACH2	Q9BYV9	841 aa		10.03	□□□□□ -0.8
RTTN-223	ENST00000640931	POGK	Q9P215	609 aa		10.03	□□□□□ -0.8
RTTN-223	ENST00000640931	RERE	Q9P2R6	1566 aa		10.03	□□□□□ -0.8
RTTN-223	ENST00000640931	ALK	Q9UM73	1620 aa		10.02	□□□□□ -0.8
RTTN-223	ENST00000640931	YTHDC2	Q9H6S0	1430 aa	Known RBP	10.02	□□□□□ -0.81
RTTN-223	ENST00000640931	NCKAP5L	Q9HCH0	1330 aa		10.02	□□□□□ -0.81
RTTN-223	ENST00000640931	FRAT2	O75474	233 aa	Predicted RBP	10.02	□□□□□ -0.81
RTTN-223	ENST00000640931	FBLN1	P23142	703 aa		10.02	□□□□□ -0.81
RTTN-223	ENST00000640931	PDE4A	P27815	886 aa		10.02	□□□□□ -0.81
RTTN-223	ENST00000640931	CCDC94	Q9BW85	323 aa	Predicted RBP	10.02	□□□□□ -0.81
RTTN-223	ENST00000640931	MET	P08581	1390 aa		10.01	□□□□□ -0.81
RTTN-223	ENST00000640931	TXNDC2	Q86VQ3	553 aa		10.01	□□□□□ -0.81

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