RNA–Protein interactions for RNA: ENST00000638076.1

CLN6-224, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 2,323 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-224ENST00000638076 NUDT16Q96DE0 195 aaKnown RBP27.91■■■□□ 2.06
CLN6-224ENST00000638076 ADAMTS13Q76LX8 1427 aa27.9■■■□□ 2.06
CLN6-224ENST00000638076 CENPQQ7L2Z9 268 aaPredicted RBP27.9■■■□□ 2.06
CLN6-224ENST00000638076 EDC4Q6P2E9 1401 aaKnown RBP27.89■■■□□ 2.06
CLN6-224ENST00000638076 MAPK8IP3Q9UPT6 1336 aa27.89■■■□□ 2.06
CLN6-224ENST00000638076 MS4A1P11836 297 aa27.89■■■□□ 2.06
CLN6-224ENST00000638076 LTKP29376 864 aa27.89■■■□□ 2.06
CLN6-224ENST00000638076 MYH16Q9H6N6 1097 aa27.89■■■□□ 2.06
CLN6-224ENST00000638076 FBLN1P23142 703 aa27.89■■■□□ 2.05
CLN6-224ENST00000638076 TMPOP42166 694 aaKnown RBP27.89■■■□□ 2.05
CLN6-224ENST00000638076 RARSP54136 660 aaKnown RBP27.89■■■□□ 2.05
CLN6-224ENST00000638076 NCKAP5LQ9HCH0 1330 aa27.88■■■□□ 2.05
CLN6-224ENST00000638076 CANXP27824 592 aaKnown RBP27.88■■■□□ 2.05
CLN6-224ENST00000638076 PDE3AQ14432 1141 aa27.88■■■□□ 2.05
CLN6-224ENST00000638076 CCDC61Q9Y6R9 512 aa27.88■■■□□ 2.05
CLN6-224ENST00000638076 SKAP1Q86WV1 359 aa27.87■■■□□ 2.05
CLN6-224ENST00000638076 POLKQ9UBT6 870 aa27.87■■■□□ 2.05
CLN6-224ENST00000638076 ROBO2Q9HCK4 1378 aa27.87■■■□□ 2.05
CLN6-224ENST00000638076 PPM1GO15355 546 aaPredicted RBP27.86■■■□□ 2.05
CLN6-224ENST00000638076 PLEKHG1Q9ULL1 1385 aa27.86■■■□□ 2.05
CLN6-224ENST00000638076 NME9Q86XW9 330 aa27.85■■■□□ 2.05
CLN6-224ENST00000638076 FRAT1Q92837 279 aaPredicted RBP27.84■■■□□ 2.05
CLN6-224ENST00000638076 CDC42BPGQ6DT37 1551 aa27.84■■■□□ 2.05
CLN6-224ENST00000638076 PDE4AP27815 886 aa27.84■■■□□ 2.05
CLN6-224ENST00000638076 TRIM35Q9UPQ4 493 aa27.84■■■□□ 2.05
CLN6-224ENST00000638076 PNNQ9H307 717 aaKnown RBP27.83■■■□□ 2.05
CLN6-224ENST00000638076 PANK1Q8TE04 598 aa27.81■■■□□ 2.04
CLN6-224ENST00000638076 PRR36Q9H6K5 1346 aa27.81■■■□□ 2.04
CLN6-224ENST00000638076 PLPPR3Q6T4P5 718 aa27.81■■■□□ 2.04
CLN6-224ENST00000638076 ZRANB1Q9UGI0 708 aa27.81■■■□□ 2.04
CLN6-224ENST00000638076 ANP32AP39687 249 aaKnown RBP27.8■■■□□ 2.04
CLN6-224ENST00000638076 BACH2Q9BYV9 841 aa27.8■■■□□ 2.04
CLN6-224ENST00000638076 FCHSD2O94868 740 aa27.79■■■□□ 2.04
CLN6-224ENST00000638076 RIPK4P57078 832 aa27.79■■■□□ 2.04
CLN6-224ENST00000638076 COG6Q9Y2V7 657 aa27.79■■■□□ 2.04
CLN6-224ENST00000638076 EID1Q9Y6B2 187 aa27.79■■■□□ 2.04
CLN6-224ENST00000638076 C3P01024 1663 aa27.79■■■□□ 2.04
CLN6-224ENST00000638076 ERICH6Q7L0X2 663 aa27.79■■■□□ 2.04
CLN6-224ENST00000638076 TSR2Q969E8 191 aaKnown RBP27.79■■■□□ 2.04
CLN6-224ENST00000638076 BCL2L13Q9BXK5 485 aa27.79■■■□□ 2.04
CLN6-224ENST00000638076 EMILIN1Q9Y6C2 1016 aa27.79■■■□□ 2.04
CLN6-224ENST00000638076 MAP2P11137 1827 aaKnown RBP27.78■■■□□ 2.04
CLN6-224ENST00000638076 MON2Q7Z3U7 1717 aa27.78■■■□□ 2.04
CLN6-224ENST00000638076 SLC26A8Q96RN1 970 aa27.78■■■□□ 2.04
CLN6-224ENST00000638076 COG3Q96JB2 828 aa27.77■■■□□ 2.04
CLN6-224ENST00000638076 ZNF692Q9BU19 519 aaPredicted RBP27.76■■■□□ 2.04
CLN6-224ENST00000638076 RSPH6AQ9H0K4 717 aa27.76■■■□□ 2.03
CLN6-224ENST00000638076 LRRC7Q96NW7 1537 aa27.76■■■□□ 2.03
CLN6-224ENST00000638076 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.75■■■□□ 2.03
CLN6-224ENST00000638076 AATKQ6ZMQ8 1374 aa27.74■■■□□ 2.03
CLN6-224ENST00000638076 AKAP12Q02952 1782 aa27.74■■■□□ 2.03
CLN6-224ENST00000638076 PRKAR2BP31323 418 aa27.74■■■□□ 2.03
CLN6-224ENST00000638076 CLUAP1Q96AJ1 413 aa27.74■■■□□ 2.03
CLN6-224ENST00000638076 PTPRUQ92729 1446 aa27.74■■■□□ 2.03
CLN6-224ENST00000638076 IL16Q14005 1332 aa27.74■■■□□ 2.03
CLN6-224ENST00000638076 ITSN1Q15811 1721 aa27.73■■■□□ 2.03
CLN6-224ENST00000638076 CT47B1P0C2W7 299 aaPredicted RBP27.73■■■□□ 2.03
CLN6-224ENST00000638076 SLIT1O75093 1534 aa27.73■■■□□ 2.03
CLN6-224ENST00000638076 FER1L4A9Z1Z3 1794 aa27.72■■■□□ 2.03
CLN6-224ENST00000638076 EXOSC9Q06265 439 aaKnown RBP27.72■■■□□ 2.03
CLN6-224ENST00000638076 ARHGAP23Q9P227 1491 aa27.72■■■□□ 2.03
CLN6-224ENST00000638076 TNNQ9UQP3 1299 aa27.72■■■□□ 2.03
CLN6-224ENST00000638076 CDK12Q9NYV4 1490 aaPredicted RBP27.71■■■□□ 2.03
CLN6-224ENST00000638076 NEFMP07197 916 aa27.7■■■□□ 2.03
CLN6-224ENST00000638076 HMOX1P09601 288 aa27.7■■■□□ 2.03
CLN6-224ENST00000638076 RLBP1P12271 317 aa27.7■■■□□ 2.03
CLN6-224ENST00000638076 IL13P35225 146 aa27.7■■■□□ 2.03
CLN6-224ENST00000638076 IPO9Q96P70 1041 aaKnown RBP27.7■■■□□ 2.03
CLN6-224ENST00000638076 NUTM2FA1L443 756 aa27.7■■■□□ 2.02
CLN6-224ENST00000638076 IGHDP01880 384 aa27.69■■■□□ 2.02
CLN6-224ENST00000638076 RRS1Q15050 365 aaKnown RBP27.69■■■□□ 2.02
CLN6-224ENST00000638076 TRHP20396 242 aaPredicted RBP27.69■■■□□ 2.02
CLN6-224ENST00000638076 AMOTL2Q9Y2J4 779 aa27.68■■■□□ 2.02
CLN6-224ENST00000638076 NOP58Q9Y2X3 529 aaKnown RBP27.68■■■□□ 2.02
CLN6-224ENST00000638076 ACEP12821 1306 aa27.67■■■□□ 2.02
CLN6-224ENST00000638076 NPM2Q86SE8 214 aaKnown RBP27.67■■■□□ 2.02
CLN6-224ENST00000638076 THEMISQ8N1K5 641 aaPredicted RBP27.67■■■□□ 2.02
CLN6-224ENST00000638076 TBX22Q9Y458 520 aa27.67■■■□□ 2.02
CLN6-224ENST00000638076 PHACTR3Q96KR7 559 aa27.66■■■□□ 2.02
CLN6-224ENST00000638076 PLEKHG3A1L390 1219 aa27.66■■■□□ 2.02
CLN6-224ENST00000638076 TTC21BQ7Z4L5 1316 aa27.65■■■□□ 2.02
CLN6-224ENST00000638076 TOPAZ1Q8N9V7 1692 aa27.65■■■□□ 2.02
CLN6-224ENST00000638076 AAMPQ13685 434 aa27.64■■■□□ 2.02
CLN6-224ENST00000638076 ZKSCAN2Q63HK3 967 aa27.64■■■□□ 2.02
CLN6-224ENST00000638076 SMC4Q9NTJ3 1288 aa27.64■■■□□ 2.02
CLN6-224ENST00000638076 NFE2L2Q16236 605 aa27.63■■■□□ 2.01
CLN6-224ENST00000638076 RGS3P49796 1198 aa27.63■■■□□ 2.01
CLN6-224ENST00000638076 NRKQ7Z2Y5 1582 aa27.61■■■□□ 2.01
CLN6-224ENST00000638076 SSH1Q8WYL5 1049 aa27.61■■■□□ 2.01
CLN6-224ENST00000638076 PAK3O75914 559 aaPredicted RBP27.6■■■□□ 2.01
CLN6-224ENST00000638076 USP6P35125 1406 aa27.6■■■□□ 2.01
CLN6-224ENST00000638076 PTCH1Q13635 1447 aa27.59■■■□□ 2.01
CLN6-224ENST00000638076 FTSJ3Q8IY81 847 aaKnown RBP27.59■■■□□ 2.01
CLN6-224ENST00000638076 DZIP1LQ8IYY4 767 aaKnown RBP27.59■■■□□ 2.01
CLN6-224ENST00000638076 MVPQ14764 893 aaKnown RBP27.58■■■□□ 2.01
CLN6-224ENST00000638076 PCDHB15Q9Y5E8 787 aa27.57■■■□□ 2
CLN6-224ENST00000638076 PMFBP1Q8TBY8 1022 aa27.57■■■□□ 2
CLN6-224ENST00000638076 ZBTB47Q9UFB7 747 aaPredicted RBP27.57■■■□□ 2
CLN6-224ENST00000638076 OVOS2A0A0J9YW53 1432 aa27.57■■■□□ 2
CLN6-224ENST00000638076 OVOS2Q6IE36 1432 aa27.57■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms