RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 PPIP5K1Q6PFW1 1433 aa24.44■■□□□ 1.5
CLN3-263ENST00000637871 RNF123Q5XPI4 1314 aa24.43■■□□□ 1.5
CLN3-263ENST00000637871 PPP4R2Q9NY27 417 aa24.42■■□□□ 1.5
CLN3-263ENST00000637871 KIF1AQ12756 1690 aa24.42■■□□□ 1.5
CLN3-263ENST00000637871 PHF8Q9UPP1 1060 aa24.41■■□□□ 1.5
CLN3-263ENST00000637871 ATAD2Q6PL18 1390 aa24.4■■□□□ 1.5
CLN3-263ENST00000637871 CABP1Q9NZU7 370 aa24.4■■□□□ 1.5
CLN3-263ENST00000637871 CCDC61Q9Y6R9 512 aa24.4■■□□□ 1.5
CLN3-263ENST00000637871 XPCQ01831 940 aaPredicted RBP24.39■■□□□ 1.5
CLN3-263ENST00000637871 WDR43Q15061 677 aaKnown RBP eCLIP24.39■■□□□ 1.5
CLN3-263ENST00000637871 NHSL1Q5SYE7 1610 aa24.39■■□□□ 1.5
CLN3-263ENST00000637871 NGEFQ8N5V2 710 aa24.39■■□□□ 1.49
CLN3-263ENST00000637871 FOXO3O43524 673 aa24.38■■□□□ 1.49
CLN3-263ENST00000637871 SLC12A5Q9H2X9 1139 aa24.37■■□□□ 1.49
CLN3-263ENST00000637871 CARD14Q9BXL6 1004 aa24.36■■□□□ 1.49
CLN3-263ENST00000637871 NSD2O96028 1365 aa24.36■■□□□ 1.49
CLN3-263ENST00000637871 PHLPP1O60346 1717 aa24.35■■□□□ 1.49
CLN3-263ENST00000637871 ACEP12821 1306 aa24.35■■□□□ 1.49
CLN3-263ENST00000637871 AHDC1Q5TGY3 1603 aaPredicted RBP24.34■■□□□ 1.49
CLN3-263ENST00000637871 NGDNQ8NEJ9 315 aaKnown RBP24.34■■□□□ 1.49
CLN3-263ENST00000637871 FBXO41Q8TF61 875 aa24.34■■□□□ 1.49
CLN3-263ENST00000637871 CD163L1Q9NR16 1453 aa24.33■■□□□ 1.49
CLN3-263ENST00000637871 AKAP12Q02952 1782 aa24.32■■□□□ 1.48
CLN3-263ENST00000637871 PLEKHG3A1L390 1219 aa24.32■■□□□ 1.48
CLN3-263ENST00000637871 ANKRD36BQ8N2N9 1353 aa24.32■■□□□ 1.48
CLN3-263ENST00000637871 PXDNQ92626 1479 aa24.31■■□□□ 1.48
CLN3-263ENST00000637871 CGNL1Q0VF96 1302 aa24.31■■□□□ 1.48
CLN3-263ENST00000637871 POLR3AO14802 1390 aaPredicted RBP24.31■■□□□ 1.48
CLN3-263ENST00000637871 ADAMTS8Q9UP79 889 aa24.31■■□□□ 1.48
CLN3-263ENST00000637871 COL16A1Q07092 1604 aaPredicted RBP24.3■■□□□ 1.48
CLN3-263ENST00000637871 A0A1W2PP64 1363 aa24.29■■□□□ 1.48
CLN3-263ENST00000637871 HSPA1LP34931 641 aa24.29■■□□□ 1.48
CLN3-263ENST00000637871 NSD3Q9BZ95 1437 aa24.29■■□□□ 1.48
CLN3-263ENST00000637871 NPHP3Q7Z494 1330 aa24.29■■□□□ 1.48
CLN3-263ENST00000637871 MON2Q7Z3U7 1717 aa24.28■■□□□ 1.48
CLN3-263ENST00000637871 TRPM3Q9HCF6 1732 aaPredicted RBP24.28■■□□□ 1.48
CLN3-263ENST00000637871 PSME1Q06323 249 aa24.28■■□□□ 1.48
CLN3-263ENST00000637871 CPSF1Q10570 1443 aaKnown RBP24.27■■□□□ 1.48
CLN3-263ENST00000637871 KRT28Q7Z3Y7 464 aa24.27■■□□□ 1.48
CLN3-263ENST00000637871 NRKQ7Z2Y5 1582 aa24.26■■□□□ 1.47
CLN3-263ENST00000637871 MORC1Q86VD1 984 aa24.26■■□□□ 1.47
CLN3-263ENST00000637871 USP6P35125 1406 aa24.25■■□□□ 1.47
CLN3-263ENST00000637871 SOS2Q07890 1332 aaPredicted RBP24.24■■□□□ 1.47
CLN3-263ENST00000637871 TERF2IPQ9NYB0 399 aa24.23■■□□□ 1.47
CLN3-263ENST00000637871 PAK3O75914 559 aaPredicted RBP24.22■■□□□ 1.47
CLN3-263ENST00000637871 HDGFL2Q7Z4V5 671 aaPredicted RBP24.22■■□□□ 1.47
CLN3-263ENST00000637871 RCAN3Q9UKA8 241 aa24.22■■□□□ 1.47
CLN3-263ENST00000637871 IRX6P78412 446 aaPredicted RBP24.21■■□□□ 1.47
CLN3-263ENST00000637871 ALS2Q96Q42 1657 aa24.2■■□□□ 1.46
CLN3-263ENST00000637871 PLEKHG5O94827 1062 aa24.2■■□□□ 1.46
CLN3-263ENST00000637871 LMOD2Q6P5Q4 547 aa24.19■■□□□ 1.46
CLN3-263ENST00000637871 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.19■■□□□ 1.46
CLN3-263ENST00000637871 CFAP53Q96M91 514 aa24.19■■□□□ 1.46
CLN3-263ENST00000637871 TSHZ2Q9NRE2 1034 aa24.19■■□□□ 1.46
CLN3-263ENST00000637871 TNS3Q68CZ2 1445 aa24.18■■□□□ 1.46
CLN3-263ENST00000637871 SSH2Q76I76 1423 aa24.18■■□□□ 1.46
CLN3-263ENST00000637871 PIK3C2AO00443 1686 aa24.18■■□□□ 1.46
CLN3-263ENST00000637871 NCBP3Q53F19 620 aaKnown RBP24.18■■□□□ 1.46
CLN3-263ENST00000637871 NUTM2GQ5VZR2 741 aa24.17■■□□□ 1.46
CLN3-263ENST00000637871 ILDR1Q86SU0 546 aaPredicted RBP24.17■■□□□ 1.46
CLN3-263ENST00000637871 ZNF692Q9BU19 519 aaPredicted RBP24.17■■□□□ 1.46
CLN3-263ENST00000637871 SBNO1A3KN83 1393 aa24.16■■□□□ 1.46
CLN3-263ENST00000637871 SPATA31A3Q5VYP0 1347 aa24.16■■□□□ 1.46
CLN3-263ENST00000637871 TTC21BQ7Z4L5 1316 aa24.16■■□□□ 1.46
CLN3-263ENST00000637871 ZNF521Q96K83 1311 aa24.16■■□□□ 1.46
CLN3-263ENST00000637871 EDC4Q6P2E9 1401 aaKnown RBP24.16■■□□□ 1.46
CLN3-263ENST00000637871 RRP1P56182 461 aaKnown RBP24.15■■□□□ 1.46
CLN3-263ENST00000637871 GOLGA2Q08379 1002 aa24.14■■□□□ 1.46
CLN3-263ENST00000637871 LRRC59Q96AG4 307 aaKnown RBP24.13■■□□□ 1.45
CLN3-263ENST00000637871 ZRANB1Q9UGI0 708 aa24.13■■□□□ 1.45
CLN3-263ENST00000637871 NME9Q86XW9 330 aa24.13■■□□□ 1.45
CLN3-263ENST00000637871 SALL2Q9Y467 1007 aaPredicted RBP24.13■■□□□ 1.45
CLN3-263ENST00000637871 PNPLA6Q8IY17 1366 aa24.13■■□□□ 1.45
CLN3-263ENST00000637871 SHPRHQ149N8 1683 aa24.12■■□□□ 1.45
CLN3-263ENST00000637871 MARF1Q9Y4F3 1742 aaKnown RBP24.11■■□□□ 1.45
CLN3-263ENST00000637871 KIF20BQ96Q89 1820 aa24.11■■□□□ 1.45
CLN3-263ENST00000637871 ABTB2Q8N961 1025 aa24.1■■□□□ 1.45
CLN3-263ENST00000637871 ABCA3Q99758 1704 aa24.09■■□□□ 1.45
CLN3-263ENST00000637871 CABLES1Q8TDN4 633 aa24.09■■□□□ 1.45
CLN3-263ENST00000637871 CDCA7LQ96GN5 454 aa24.09■■□□□ 1.45
CLN3-263ENST00000637871 MED1Q15648 1581 aaPredicted RBP24.09■■□□□ 1.45
CLN3-263ENST00000637871 CRYBG1Q9Y4K1 1723 aa24.08■■□□□ 1.45
CLN3-263ENST00000637871 COL22A1Q8NFW1 1626 aaPredicted RBP24.08■■□□□ 1.45
CLN3-263ENST00000637871 JCADQ9P266 1359 aa24.08■■□□□ 1.45
CLN3-263ENST00000637871 ARHGEF10O15013 1369 aa24.07■■□□□ 1.44
CLN3-263ENST00000637871 TTC21AQ8NDW8 1320 aa24.07■■□□□ 1.44
CLN3-263ENST00000637871 PHRF1Q9P1Y6 1649 aaKnown RBP24.06■■□□□ 1.44
CLN3-263ENST00000637871 TRMT2AQ8IZ69 625 aaKnown RBP24.06■■□□□ 1.44
CLN3-263ENST00000637871 GGNBP2Q9H3C7 697 aa24.06■■□□□ 1.44
CLN3-263ENST00000637871 E9PSI1 815 aa24.05■■□□□ 1.44
CLN3-263ENST00000637871 MTHFSP49914 203 aa24.05■■□□□ 1.44
CLN3-263ENST00000637871 NLRP6P59044 892 aa24.05■■□□□ 1.44
CLN3-263ENST00000637871 SLFN5Q08AF3 891 aa24.05■■□□□ 1.44
CLN3-263ENST00000637871 DUSP27Q5VZP5 1158 aa24.05■■□□□ 1.44
CLN3-263ENST00000637871 RUNDC1Q96C34 613 aa24.05■■□□□ 1.44
CLN3-263ENST00000637871 APAF1O14727 1248 aa24.04■■□□□ 1.44
CLN3-263ENST00000637871 NUTM2BA6NNL0 878 aaPredicted RBP24.03■■□□□ 1.44
CLN3-263ENST00000637871 NUTM2EB1AL46 878 aaPredicted RBP24.03■■□□□ 1.44
CLN3-263ENST00000637871 FYB1O15117 783 aa24.03■■□□□ 1.44
CLN3-263ENST00000637871 NUTM2AQ8IVF1 878 aaPredicted RBP24.03■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms