RNA–Protein interactions for RNA: ENST00000636840.1

PNKP-226, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 117 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-226ENST00000636840 ITSN1Q15811 1721 aa11.42□□□□□ -0.58
PNKP-226ENST00000636840 USP32Q8NFA0 1604 aa11.42□□□□□ -0.58
PNKP-226ENST00000636840 NLRP6P59044 892 aa11.41□□□□□ -0.58
PNKP-226ENST00000636840 C8orf37Q96NL8 207 aa11.41□□□□□ -0.58
PNKP-226ENST00000636840 POLR3GLQ9BT43 218 aa11.41□□□□□ -0.58
PNKP-226ENST00000636840 KTN1Q86UP2 1357 aaKnown RBP11.41□□□□□ -0.58
PNKP-226ENST00000636840 NINLQ9Y2I6 1382 aa11.41□□□□□ -0.58
PNKP-226ENST00000636840 SHPRHQ149N8 1683 aa11.4□□□□□ -0.58
PNKP-226ENST00000636840 ZEB1P37275 1124 aaPredicted RBP11.4□□□□□ -0.58
PNKP-226ENST00000636840 TTC21AQ8NDW8 1320 aa11.39□□□□□ -0.59
PNKP-226ENST00000636840 MED1Q15648 1581 aaPredicted RBP11.39□□□□□ -0.59
PNKP-226ENST00000636840 NUTM2GQ5VZR2 741 aa11.39□□□□□ -0.59
PNKP-226ENST00000636840 CABLES1Q8TDN4 633 aa11.39□□□□□ -0.59
PNKP-226ENST00000636840 TTC21BQ7Z4L5 1316 aa11.38□□□□□ -0.59
PNKP-226ENST00000636840 AFF2P51816 1311 aa11.37□□□□□ -0.59
PNKP-226ENST00000636840 USP6P35125 1406 aa11.37□□□□□ -0.59
PNKP-226ENST00000636840 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.37□□□□□ -0.59
PNKP-226ENST00000636840 KCNH5Q8NCM2 988 aa11.37□□□□□ -0.59
PNKP-226ENST00000636840 QTRT2Q9H974 415 aaKnown RBP11.37□□□□□ -0.59
PNKP-226ENST00000636840 USP21Q9UK80 565 aa11.37□□□□□ -0.59
PNKP-226ENST00000636840 FNBP4Q8N3X1 1017 aaPredicted RBP11.36□□□□□ -0.59
PNKP-226ENST00000636840 CPSF1Q10570 1443 aaKnown RBP11.35□□□□□ -0.59
PNKP-226ENST00000636840 GCP02774 474 aa11.35□□□□□ -0.59
PNKP-226ENST00000636840 RXRBP28702 533 aa11.35□□□□□ -0.59
PNKP-226ENST00000636840 PRDM11Q9NQV5 511 aa11.35□□□□□ -0.59
PNKP-226ENST00000636840 TRPC5Q9UL62 973 aaPredicted RBP11.35□□□□□ -0.59
PNKP-226ENST00000636840 TOPAZ1Q8N9V7 1692 aa11.34□□□□□ -0.59
PNKP-226ENST00000636840 ZC3H6P61129 1189 aaKnown RBP11.34□□□□□ -0.59
PNKP-226ENST00000636840 RGS17Q9UGC6 210 aaPredicted RBP11.34□□□□□ -0.59
PNKP-226ENST00000636840 FAM83GA6ND36 823 aa11.33□□□□□ -0.6
PNKP-226ENST00000636840 EVA1CP58658 441 aa11.33□□□□□ -0.6
PNKP-226ENST00000636840 POTEAQ6S8J7 498 aa11.33□□□□□ -0.6
PNKP-226ENST00000636840 UNC5CLQ8IV45 518 aa11.33□□□□□ -0.6
PNKP-226ENST00000636840 COG3Q96JB2 828 aa11.33□□□□□ -0.6
PNKP-226ENST00000636840 LRP6O75581 1613 aa11.33□□□□□ -0.6
PNKP-226ENST00000636840 COL22A1Q8NFW1 1626 aaPredicted RBP11.33□□□□□ -0.6
PNKP-226ENST00000636840 EDC4Q6P2E9 1401 aaKnown RBP11.33□□□□□ -0.6
PNKP-226ENST00000636840 ANKRD36BQ8N2N9 1353 aa11.32□□□□□ -0.6
PNKP-226ENST00000636840 ZBTB7CA1YPR0 619 aa11.32□□□□□ -0.6
PNKP-226ENST00000636840 RBM6P78332 1123 aaKnown RBP11.32□□□□□ -0.6
PNKP-226ENST00000636840 CCDC9Q9Y3X0 531 aaKnown RBP11.32□□□□□ -0.6
PNKP-226ENST00000636840 A0A1W2PP64 1363 aa11.31□□□□□ -0.6
PNKP-226ENST00000636840 NME9Q86XW9 330 aa11.31□□□□□ -0.6
PNKP-226ENST00000636840 BTG4Q9NY30 223 aa11.31□□□□□ -0.6
PNKP-226ENST00000636840 SSH2Q76I76 1423 aa11.31□□□□□ -0.6
PNKP-226ENST00000636840 TRPM3Q9HCF6 1732 aaPredicted RBP11.31□□□□□ -0.6
PNKP-226ENST00000636840 USP19O94966 1318 aa11.31□□□□□ -0.6
PNKP-226ENST00000636840 SOX12O15370 315 aa11.3□□□□□ -0.6
PNKP-226ENST00000636840 ALS2Q96Q42 1657 aa11.3□□□□□ -0.6
PNKP-226ENST00000636840 USP31Q70CQ4 1352 aa11.29□□□□□ -0.6
PNKP-226ENST00000636840 CHRNA2Q15822 529 aa11.29□□□□□ -0.6
PNKP-226ENST00000636840 GJD4Q96KN9 370 aaPredicted RBP11.29□□□□□ -0.6
PNKP-226ENST00000636840 PANK3Q9H999 370 aa11.29□□□□□ -0.6
PNKP-226ENST00000636840 KNSTRNQ9Y448 316 aa11.29□□□□□ -0.6
PNKP-226ENST00000636840 KIAA0232Q92628 1395 aa11.28□□□□□ -0.6
PNKP-226ENST00000636840 CD163L1Q9NR16 1453 aa11.28□□□□□ -0.6
PNKP-226ENST00000636840 FYB1O15117 783 aa11.28□□□□□ -0.6
PNKP-226ENST00000636840 VPS72Q15906 364 aa11.28□□□□□ -0.6
PNKP-226ENST00000636840 STRN4Q9NRL3 753 aa11.28□□□□□ -0.6
PNKP-226ENST00000636840 CGNL1Q0VF96 1302 aa11.28□□□□□ -0.6
PNKP-226ENST00000636840 CPDO75976 1380 aa11.28□□□□□ -0.6
PNKP-226ENST00000636840 AKAP12Q02952 1782 aa11.27□□□□□ -0.61
PNKP-226ENST00000636840 C11orf95C9JLR9 678 aaPredicted RBP11.27□□□□□ -0.61
PNKP-226ENST00000636840 ILDR2Q71H61 639 aa11.27□□□□□ -0.61
PNKP-226ENST00000636840 ARHGEF25Q86VW2 580 aa11.27□□□□□ -0.61
PNKP-226ENST00000636840 GGNBP2Q9H3C7 697 aa11.27□□□□□ -0.61
PNKP-226ENST00000636840 ZRANB1Q9UGI0 708 aa11.27□□□□□ -0.61
PNKP-226ENST00000636840 CARD14Q9BXL6 1004 aa11.26□□□□□ -0.61
PNKP-226ENST00000636840 KIF7Q2M1P5 1343 aa11.26□□□□□ -0.61
PNKP-226ENST00000636840 BCL9LQ86UU0 1499 aa11.25□□□□□ -0.61
PNKP-226ENST00000636840 SLIT2O94813 1529 aa11.25□□□□□ -0.61
PNKP-226ENST00000636840 A0A0G2JS52 829 aa11.25□□□□□ -0.61
PNKP-226ENST00000636840 CSB-PGBD3P0DP91 1061 aa11.25□□□□□ -0.61
PNKP-226ENST00000636840 AMPHP49418 695 aa11.25□□□□□ -0.61
PNKP-226ENST00000636840 MYT1Q01538 1121 aa11.25□□□□□ -0.61
PNKP-226ENST00000636840 AATKQ6ZMQ8 1374 aa11.25□□□□□ -0.61
PNKP-226ENST00000636840 MARF1Q9Y4F3 1742 aaKnown RBP11.24□□□□□ -0.61
PNKP-226ENST00000636840 ATRNO75882 1429 aa11.24□□□□□ -0.61
PNKP-226ENST00000636840 NSD3Q9BZ95 1437 aa11.24□□□□□ -0.61
PNKP-226ENST00000636840 MON2Q7Z3U7 1717 aa11.23□□□□□ -0.61
PNKP-226ENST00000636840 TOM1L2Q6ZVM7 507 aa11.23□□□□□ -0.61
PNKP-226ENST00000636840 COL14A1Q05707 1796 aaKnown RBP11.23□□□□□ -0.61
PNKP-226ENST00000636840 MORC1Q86VD1 984 aa11.22□□□□□ -0.61
PNKP-226ENST00000636840 IP6K1Q92551 441 aa11.22□□□□□ -0.61
PNKP-226ENST00000636840 CCDC7Q96M83 1385 aa11.22□□□□□ -0.61
PNKP-226ENST00000636840 THRAP3Q9Y2W1 955 aaKnown RBP11.22□□□□□ -0.61
PNKP-226ENST00000636840 SLIT3O75094 1523 aa11.21□□□□□ -0.61
PNKP-226ENST00000636840 SPATA31A5Q5VU36 1347 aa11.21□□□□□ -0.61
PNKP-226ENST00000636840 WASHC2AQ641Q2 1341 aa11.21□□□□□ -0.61
PNKP-226ENST00000636840 SPATA31A7Q8IWB4 1347 aa11.21□□□□□ -0.61
PNKP-226ENST00000636840 SOCS7O14512 581 aa11.21□□□□□ -0.61
PNKP-226ENST00000636840 TCP11L2Q8N4U5 519 aa11.21□□□□□ -0.61
PNKP-226ENST00000636840 USP35Q9P2H5 1018 aa11.21□□□□□ -0.61
PNKP-226ENST00000636840 PIK3C2AO00443 1686 aa11.2□□□□□ -0.62
PNKP-226ENST00000636840 CDK12Q9NYV4 1490 aaPredicted RBP11.2□□□□□ -0.62
PNKP-226ENST00000636840 ONECUT3O60422 494 aaPredicted RBP11.2□□□□□ -0.62
PNKP-226ENST00000636840 FAM98CQ17RN3 349 aaKnown RBP11.2□□□□□ -0.62
PNKP-226ENST00000636840 LARP1Q6PKG0 1096 aaKnown RBP11.2□□□□□ -0.62
PNKP-226ENST00000636840 SEPT12Q8IYM1 358 aa11.2□□□□□ -0.62
PNKP-226ENST00000636840 AXIN2Q9Y2T1 843 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms