RNA–Protein interactions for RNA: ENST00000636306.1

CHD2-223, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 1,755 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-223	ENST00000636306	YTHDC2	Q9H6S0	1430 aa	Known RBP	13.61	□□□□□ -0.23
CHD2-223	ENST00000636306	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.6	□□□□□ -0.23
CHD2-223	ENST00000636306	RIPK4	P57078	832 aa		13.6	□□□□□ -0.23
CHD2-223	ENST00000636306	TAF7L	Q5H9L4	462 aa		13.6	□□□□□ -0.23
CHD2-223	ENST00000636306	SETD1A	O15047	1707 aa	Known RBP	13.6	□□□□□ -0.23
CHD2-223	ENST00000636306	KNDC1	Q76NI1	1749 aa		13.6	□□□□□ -0.23
CHD2-223	ENST00000636306	CGNL1	Q0VF96	1302 aa		13.6	□□□□□ -0.23
CHD2-223	ENST00000636306	RIMS2	Q9UQ26	1411 aa		13.59	□□□□□ -0.23
CHD2-223	ENST00000636306	TMEM132E	Q6IEE7	984 aa		13.59	□□□□□ -0.23
CHD2-223	ENST00000636306	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.59	□□□□□ -0.23
CHD2-223	ENST00000636306	POLR3A	O14802	1390 aa	Predicted RBP	13.58	□□□□□ -0.24
CHD2-223	ENST00000636306	TRAK2	O60296	914 aa		13.58	□□□□□ -0.24
CHD2-223	ENST00000636306	HDGF	P51858	240 aa	Known RBP	13.58	□□□□□ -0.24
CHD2-223	ENST00000636306	DMTN	Q08495	405 aa		13.58	□□□□□ -0.24
CHD2-223	ENST00000636306	SKAP1	Q86WV1	359 aa		13.57	□□□□□ -0.24
CHD2-223	ENST00000636306	BBX	Q8WY36	941 aa	Predicted RBP	13.57	□□□□□ -0.24
CHD2-223	ENST00000636306	DDX11L8	A8MPP1	907 aa		13.56	□□□□□ -0.24
CHD2-223	ENST00000636306	CANX	P27824	592 aa	Known RBP	13.56	□□□□□ -0.24
CHD2-223	ENST00000636306	ZMYM3	Q14202	1370 aa		13.56	□□□□□ -0.24
CHD2-223	ENST00000636306	PTMS	P20962	102 aa		13.55	□□□□□ -0.24
CHD2-223	ENST00000636306	CCDC173	Q0VFZ6	552 aa		13.55	□□□□□ -0.24
CHD2-223	ENST00000636306	ZSCAN30	Q86W11	494 aa		13.55	□□□□□ -0.24
CHD2-223	ENST00000636306	TNR	Q92752	1358 aa		13.55	□□□□□ -0.24
CHD2-223	ENST00000636306	TNNT2	P45379	298 aa	Predicted RBP	13.55	□□□□□ -0.24
CHD2-223	ENST00000636306	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.55	□□□□□ -0.24
CHD2-223	ENST00000636306	MORC1	Q86VD1	984 aa		13.55	□□□□□ -0.24
CHD2-223	ENST00000636306	IPO4	Q8TEX9	1081 aa	Known RBP	13.55	□□□□□ -0.24
CHD2-223	ENST00000636306	PPP1R9B	Q96SB3	815 aa		13.55	□□□□□ -0.24
CHD2-223	ENST00000636306	CHMP5	Q9NZZ3	219 aa		13.55	□□□□□ -0.24
CHD2-223	ENST00000636306	KIF20B	Q96Q89	1820 aa		13.54	□□□□□ -0.24
CHD2-223	ENST00000636306	UBR1	Q8IWV7	1749 aa		13.54	□□□□□ -0.24
CHD2-223	ENST00000636306	MED14	O60244	1454 aa		13.54	□□□□□ -0.24
CHD2-223	ENST00000636306	GTF2E1	P29083	439 aa	Predicted RBP	13.54	□□□□□ -0.24
CHD2-223	ENST00000636306	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.54	□□□□□ -0.24
CHD2-223	ENST00000636306	CFAP53	Q96M91	514 aa		13.54	□□□□□ -0.24
CHD2-223	ENST00000636306	CARD14	Q9BXL6	1004 aa		13.54	□□□□□ -0.24
CHD2-223	ENST00000636306	NAP1L2	Q9ULW6	460 aa	Predicted RBP	13.54	□□□□□ -0.24
CHD2-223	ENST00000636306	SHPRH	Q149N8	1683 aa		13.54	□□□□□ -0.24
CHD2-223	ENST00000636306	NLRP1	Q9C000	1473 aa		13.54	□□□□□ -0.24
CHD2-223	ENST00000636306	DYNC1I1	O14576	645 aa		13.53	□□□□□ -0.24
CHD2-223	ENST00000636306	HS1BP3	Q53T59	392 aa		13.53	□□□□□ -0.24
CHD2-223	ENST00000636306	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.53	□□□□□ -0.24
CHD2-223	ENST00000636306	SLK	Q9H2G2	1235 aa	Predicted RBP	13.53	□□□□□ -0.24
CHD2-223	ENST00000636306	ADAMTS8	Q9UP79	889 aa		13.53	□□□□□ -0.24
CHD2-223	ENST00000636306	NRXN3	Q9Y4C0	1643 aa		13.53	□□□□□ -0.24
CHD2-223	ENST00000636306	MAPK8IP3	Q9UPT6	1336 aa		13.53	□□□□□ -0.24
CHD2-223	ENST00000636306	PLIN1	O60240	522 aa		13.53	□□□□□ -0.24
CHD2-223	ENST00000636306	ILDR1	Q86SU0	546 aa	Predicted RBP	13.53	□□□□□ -0.24
CHD2-223	ENST00000636306	GTPBP4	Q9BZE4	634 aa	Known RBP	13.53	□□□□□ -0.24
CHD2-223	ENST00000636306	TERF2IP	Q9NYB0	399 aa		13.53	□□□□□ -0.24
CHD2-223	ENST00000636306	ABCC11	Q96J66	1382 aa		13.52	□□□□□ -0.24
CHD2-223	ENST00000636306	KIF20A	O95235	890 aa		13.52	□□□□□ -0.25
CHD2-223	ENST00000636306	CPS1	P31327	1500 aa		13.52	□□□□□ -0.25
CHD2-223	ENST00000636306	SRPK2	P78362	688 aa	Known RBP	13.51	□□□□□ -0.25
CHD2-223	ENST00000636306	MLEC	Q14165	292 aa		13.51	□□□□□ -0.25
CHD2-223	ENST00000636306	ATP7B	P35670	1465 aa		13.51	□□□□□ -0.25
CHD2-223	ENST00000636306	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.5	□□□□□ -0.25
CHD2-223	ENST00000636306	SLC12A5	Q9H2X9	1139 aa		13.5	□□□□□ -0.25
CHD2-223	ENST00000636306	FER1L4	A9Z1Z3	1794 aa		13.5	□□□□□ -0.25
CHD2-223	ENST00000636306	TAF3	Q5VWG9	929 aa		13.5	□□□□□ -0.25
CHD2-223	ENST00000636306	PRAM1	Q96QH2	718 aa		13.5	□□□□□ -0.25
CHD2-223	ENST00000636306	UPF2	Q9HAU5	1272 aa	Known RBP	13.5	□□□□□ -0.25
CHD2-223	ENST00000636306	STK26	Q9P289	416 aa		13.5	□□□□□ -0.25
CHD2-223	ENST00000636306	TECPR2	O15040	1411 aa		13.49	□□□□□ -0.25
CHD2-223	ENST00000636306	FAM135B	Q49AJ0	1406 aa		13.49	□□□□□ -0.25
CHD2-223	ENST00000636306	MSN	P26038	577 aa	Known RBP	13.49	□□□□□ -0.25
CHD2-223	ENST00000636306	GOLGA2	Q08379	1002 aa		13.49	□□□□□ -0.25
CHD2-223	ENST00000636306	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.49	□□□□□ -0.25
CHD2-223	ENST00000636306	ARX	Q96QS3	562 aa		13.49	□□□□□ -0.25
CHD2-223	ENST00000636306	GZF1	Q9H116	711 aa	Predicted RBP	13.49	□□□□□ -0.25
CHD2-223	ENST00000636306	CCDC94	Q9BW85	323 aa	Predicted RBP	13.48	□□□□□ -0.25
CHD2-223	ENST00000636306	TBC1D2	Q9BYX2	928 aa		13.48	□□□□□ -0.25
CHD2-223	ENST00000636306	FAM13B	Q9NYF5	915 aa		13.48	□□□□□ -0.25
CHD2-223	ENST00000636306		A0A1W2PP64	1363 aa		13.48	□□□□□ -0.25
CHD2-223	ENST00000636306	ZNF500	O60304	480 aa	Predicted RBP	13.48	□□□□□ -0.25
CHD2-223	ENST00000636306	LETM1	O95202	739 aa	Predicted RBP	13.48	□□□□□ -0.25
CHD2-223	ENST00000636306	CSPP1	Q1MSJ5	1256 aa		13.48	□□□□□ -0.25
CHD2-223	ENST00000636306	CDCA7L	Q96GN5	454 aa		13.47	□□□□□ -0.25
CHD2-223	ENST00000636306	TBC1D32	Q96NH3	1257 aa		13.47	□□□□□ -0.25
CHD2-223	ENST00000636306	CABP2	Q9NPB3	220 aa		13.47	□□□□□ -0.25
CHD2-223	ENST00000636306	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.46	□□□□□ -0.25
CHD2-223	ENST00000636306	ZNF521	Q96K83	1311 aa		13.46	□□□□□ -0.25
CHD2-223	ENST00000636306	PLEKHH1	Q9ULM0	1364 aa		13.46	□□□□□ -0.25
CHD2-223	ENST00000636306	NCBP3	Q53F19	620 aa	Known RBP	13.46	□□□□□ -0.25
CHD2-223	ENST00000636306	PPP4R3B	Q5MIZ7	849 aa		13.46	□□□□□ -0.25
CHD2-223	ENST00000636306	ANP32B	Q92688	251 aa	Known RBP	13.46	□□□□□ -0.25
CHD2-223	ENST00000636306	SIRT1	Q96EB6	747 aa		13.46	□□□□□ -0.25
CHD2-223	ENST00000636306	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.46	□□□□□ -0.25
CHD2-223	ENST00000636306	ITSN1	Q15811	1721 aa		13.46	□□□□□ -0.25
CHD2-223	ENST00000636306	C3	P01024	1663 aa		13.46	□□□□□ -0.26
CHD2-223	ENST00000636306	ADGRB2	O60241	1585 aa		13.46	□□□□□ -0.26
CHD2-223	ENST00000636306	TMEM2	Q9UHN6	1383 aa		13.45	□□□□□ -0.26
CHD2-223	ENST00000636306	C20orf194	Q5TEA3	1177 aa		13.45	□□□□□ -0.26
CHD2-223	ENST00000636306	DIP2A	Q14689	1571 aa		13.45	□□□□□ -0.26
CHD2-223	ENST00000636306	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.45	□□□□□ -0.26
CHD2-223	ENST00000636306	NKTR	P30414	1462 aa	Known RBP	13.44	□□□□□ -0.26
CHD2-223	ENST00000636306	IQSEC2	Q5JU85	1478 aa		13.44	□□□□□ -0.26
CHD2-223	ENST00000636306	UQCRHL	A0A096LP55	91 aa		13.44	□□□□□ -0.26
CHD2-223	ENST00000636306		E9PSI1	815 aa		13.44	□□□□□ -0.26
CHD2-223	ENST00000636306	UQCRH	P07919	91 aa		13.44	□□□□□ -0.26

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