RNA–Protein interactions for RNA: ENST00000635675.2

LINC00339-210, long intergenic non-protein coding RNA 339, humanhuman

TSL 5 BASIC

Gene LINC00339, Length 1,404 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-210ENST00000635675 TMC1Q8TDI8 760 aa13.62□□□□□ -0.23
LINC00339-210ENST00000635675 SSH2Q76I76 1423 aa13.62□□□□□ -0.23
LINC00339-210ENST00000635675 AKAP12Q02952 1782 aa13.61□□□□□ -0.23
LINC00339-210ENST00000635675 CD163L1Q9NR16 1453 aa13.61□□□□□ -0.23
LINC00339-210ENST00000635675 MEX3CQ5U5Q3 659 aaKnown RBP13.61□□□□□ -0.23
LINC00339-210ENST00000635675 CABLES1Q8TDN4 633 aa13.61□□□□□ -0.23
LINC00339-210ENST00000635675 RGS17Q9UGC6 210 aaPredicted RBP13.61□□□□□ -0.23
LINC00339-210ENST00000635675 ADAMTS2O95450 1211 aa13.6□□□□□ -0.23
LINC00339-210ENST00000635675 NINLQ9Y2I6 1382 aa13.6□□□□□ -0.23
LINC00339-210ENST00000635675 ABTB2Q8N961 1025 aa13.59□□□□□ -0.23
LINC00339-210ENST00000635675 TERF2IPQ9NYB0 399 aa13.59□□□□□ -0.23
LINC00339-210ENST00000635675 KTN1Q86UP2 1357 aaKnown RBP13.59□□□□□ -0.23
LINC00339-210ENST00000635675 TTC21BQ7Z4L5 1316 aa13.58□□□□□ -0.24
LINC00339-210ENST00000635675 MON2Q7Z3U7 1717 aa13.58□□□□□ -0.24
LINC00339-210ENST00000635675 PLEKHG5O94827 1062 aa13.57□□□□□ -0.24
LINC00339-210ENST00000635675 NUTM2GQ5VZR2 741 aa13.57□□□□□ -0.24
LINC00339-210ENST00000635675 HDGFL2Q7Z4V5 671 aaPredicted RBP13.57□□□□□ -0.24
LINC00339-210ENST00000635675 C8orf37Q96NL8 207 aa13.57□□□□□ -0.24
LINC00339-210ENST00000635675 ABCA3Q99758 1704 aa13.57□□□□□ -0.24
LINC00339-210ENST00000635675 A0A1W2PP64 1363 aa13.57□□□□□ -0.24
LINC00339-210ENST00000635675 C11orf95C9JLR9 678 aaPredicted RBP13.56□□□□□ -0.24
LINC00339-210ENST00000635675 NGLY1Q96IV0 654 aa13.56□□□□□ -0.24
LINC00339-210ENST00000635675 MARF1Q9Y4F3 1742 aaKnown RBP13.56□□□□□ -0.24
LINC00339-210ENST00000635675 CRYBG1Q9Y4K1 1723 aa13.56□□□□□ -0.24
LINC00339-210ENST00000635675 TTC21AQ8NDW8 1320 aa13.56□□□□□ -0.24
LINC00339-210ENST00000635675 NRKQ7Z2Y5 1582 aa13.56□□□□□ -0.24
LINC00339-210ENST00000635675 HAP1P54257 671 aaPredicted RBP13.56□□□□□ -0.24
LINC00339-210ENST00000635675 NLRP13Q86W25 1043 aa13.56□□□□□ -0.24
LINC00339-210ENST00000635675 FNBP4Q8N3X1 1017 aaPredicted RBP13.56□□□□□ -0.24
LINC00339-210ENST00000635675 USP19O94966 1318 aa13.55□□□□□ -0.24
LINC00339-210ENST00000635675 AFF2P51816 1311 aa13.55□□□□□ -0.24
LINC00339-210ENST00000635675 NLRP6P59044 892 aa13.55□□□□□ -0.24
LINC00339-210ENST00000635675 ANKRD36BQ8N2N9 1353 aa13.54□□□□□ -0.24
LINC00339-210ENST00000635675 PIK3C2AO00443 1686 aa13.54□□□□□ -0.24
LINC00339-210ENST00000635675 ZNF772Q68DY9 489 aaPredicted RBP13.54□□□□□ -0.24
LINC00339-210ENST00000635675 EDC4Q6P2E9 1401 aaKnown RBP13.54□□□□□ -0.24
LINC00339-210ENST00000635675 POTEAQ6S8J7 498 aa13.54□□□□□ -0.24
LINC00339-210ENST00000635675 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.54□□□□□ -0.24
LINC00339-210ENST00000635675 FAM83GA6ND36 823 aa13.53□□□□□ -0.24
LINC00339-210ENST00000635675 MYOM1P52179 1685 aa13.53□□□□□ -0.24
LINC00339-210ENST00000635675 PHRF1Q9P1Y6 1649 aaKnown RBP13.52□□□□□ -0.24
LINC00339-210ENST00000635675 GCP02774 474 aa13.52□□□□□ -0.25
LINC00339-210ENST00000635675 USP31Q70CQ4 1352 aa13.52□□□□□ -0.25
LINC00339-210ENST00000635675 BCL9LQ86UU0 1499 aa13.51□□□□□ -0.25
LINC00339-210ENST00000635675 ILDR2Q71H61 639 aa13.51□□□□□ -0.25
LINC00339-210ENST00000635675 NME9Q86XW9 330 aa13.51□□□□□ -0.25
LINC00339-210ENST00000635675 ZRANB1Q9UGI0 708 aa13.51□□□□□ -0.25
LINC00339-210ENST00000635675 USP21Q9UK80 565 aa13.51□□□□□ -0.25
LINC00339-210ENST00000635675 SLIT2O94813 1529 aa13.51□□□□□ -0.25
LINC00339-210ENST00000635675 POLR3GLQ9BT43 218 aa13.5□□□□□ -0.25
LINC00339-210ENST00000635675 CARD14Q9BXL6 1004 aa13.5□□□□□ -0.25
LINC00339-210ENST00000635675 SLIT3O75094 1523 aa13.5□□□□□ -0.25
LINC00339-210ENST00000635675 ZC3H6P61129 1189 aaKnown RBP13.49□□□□□ -0.25
LINC00339-210ENST00000635675 QTRT2Q9H974 415 aaKnown RBP13.49□□□□□ -0.25
LINC00339-210ENST00000635675 KIF7Q2M1P5 1343 aa13.49□□□□□ -0.25
LINC00339-210ENST00000635675 CPDO75976 1380 aa13.49□□□□□ -0.25
LINC00339-210ENST00000635675 KIAA0232Q92628 1395 aa13.49□□□□□ -0.25
LINC00339-210ENST00000635675 PRDM11Q9NQV5 511 aa13.48□□□□□ -0.25
LINC00339-210ENST00000635675 USP54Q70EL1 1684 aa13.48□□□□□ -0.25
LINC00339-210ENST00000635675 COL14A1Q05707 1796 aaKnown RBP13.48□□□□□ -0.25
LINC00339-210ENST00000635675 FYB1O15117 783 aa13.47□□□□□ -0.25
LINC00339-210ENST00000635675 UNC5CLQ8IV45 518 aa13.47□□□□□ -0.25
LINC00339-210ENST00000635675 KCNH5Q8NCM2 988 aa13.47□□□□□ -0.25
LINC00339-210ENST00000635675 PLCH1Q4KWH8 1693 aa13.47□□□□□ -0.25
LINC00339-210ENST00000635675 NWD2Q9ULI1 1742 aa13.47□□□□□ -0.25
LINC00339-210ENST00000635675 ZEB1P37275 1124 aaPredicted RBP13.47□□□□□ -0.25
LINC00339-210ENST00000635675 CHRNA2Q15822 529 aa13.47□□□□□ -0.25
LINC00339-210ENST00000635675 POTEDQ86YR6 584 aa13.47□□□□□ -0.25
LINC00339-210ENST00000635675 BTG4Q9NY30 223 aa13.47□□□□□ -0.25
LINC00339-210ENST00000635675 TRPC5Q9UL62 973 aaPredicted RBP13.47□□□□□ -0.25
LINC00339-210ENST00000635675 ATRNO75882 1429 aa13.47□□□□□ -0.25
LINC00339-210ENST00000635675 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.46□□□□□ -0.26
LINC00339-210ENST00000635675 OVOS2A0A0J9YW53 1432 aa13.46□□□□□ -0.26
LINC00339-210ENST00000635675 OVOS2Q6IE36 1432 aa13.46□□□□□ -0.26
LINC00339-210ENST00000635675 RXRBP28702 533 aa13.46□□□□□ -0.26
LINC00339-210ENST00000635675 PANK3Q9H999 370 aa13.46□□□□□ -0.26
LINC00339-210ENST00000635675 NFAT5O94916 1531 aa13.45□□□□□ -0.26
LINC00339-210ENST00000635675 NSD3Q9BZ95 1437 aa13.45□□□□□ -0.26
LINC00339-210ENST00000635675 WASHC2AQ641Q2 1341 aa13.45□□□□□ -0.26
LINC00339-210ENST00000635675 RBM6P78332 1123 aaKnown RBP13.45□□□□□ -0.26
LINC00339-210ENST00000635675 ARHGEF25Q86VW2 580 aa13.45□□□□□ -0.26
LINC00339-210ENST00000635675 CCDC7Q96M83 1385 aa13.44□□□□□ -0.26
LINC00339-210ENST00000635675 SOX12O15370 315 aa13.44□□□□□ -0.26
LINC00339-210ENST00000635675 VPS72Q15906 364 aa13.44□□□□□ -0.26
LINC00339-210ENST00000635675 COG3Q96JB2 828 aa13.44□□□□□ -0.26
LINC00339-210ENST00000635675 AATKQ6ZMQ8 1374 aa13.43□□□□□ -0.26
LINC00339-210ENST00000635675 NRAPQ86VF7 1730 aa13.43□□□□□ -0.26
LINC00339-210ENST00000635675 LMO7Q8WWI1 1683 aa13.43□□□□□ -0.26
LINC00339-210ENST00000635675 CAMTA1Q9Y6Y1 1673 aa13.43□□□□□ -0.26
LINC00339-210ENST00000635675 GJD4Q96KN9 370 aaPredicted RBP13.43□□□□□ -0.26
LINC00339-210ENST00000635675 GGNBP2Q9H3C7 697 aa13.43□□□□□ -0.26
LINC00339-210ENST00000635675 COL18A1P39060 1754 aa13.42□□□□□ -0.26
LINC00339-210ENST00000635675 CGNL1Q0VF96 1302 aa13.41□□□□□ -0.26
LINC00339-210ENST00000635675 AXIN2Q9Y2T1 843 aa13.41□□□□□ -0.26
LINC00339-210ENST00000635675 KIF20BQ96Q89 1820 aa13.41□□□□□ -0.26
LINC00339-210ENST00000635675 CDK12Q9NYV4 1490 aaPredicted RBP13.4□□□□□ -0.26
LINC00339-210ENST00000635675 ZBTB7CA1YPR0 619 aa13.4□□□□□ -0.26
LINC00339-210ENST00000635675 FBLN1P23142 703 aa13.39□□□□□ -0.27
LINC00339-210ENST00000635675 EVA1CP58658 441 aa13.39□□□□□ -0.27
LINC00339-210ENST00000635675 STRN4Q9NRL3 753 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 156 ms