RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 GGNBP2Q9H3C7 697 aa20.17■□□□□ 0.82
LIMS3-206ENST00000631420 AKAP12Q02952 1782 aa20.17■□□□□ 0.82
LIMS3-206ENST00000631420 PAK3O75914 559 aaPredicted RBP20.17■□□□□ 0.82
LIMS3-206ENST00000631420 PRKRIP1Q9H875 184 aaPredicted RBP20.17■□□□□ 0.82
LIMS3-206ENST00000631420 PIP4K2BP78356 416 aa20.16■□□□□ 0.82
LIMS3-206ENST00000631420 IQSEC2Q5JU85 1478 aa20.15■□□□□ 0.82
LIMS3-206ENST00000631420 NPHP3Q7Z494 1330 aa20.14■□□□□ 0.82
LIMS3-206ENST00000631420 MON2Q7Z3U7 1717 aa20.14■□□□□ 0.81
LIMS3-206ENST00000631420 NPC1L1Q9UHC9 1359 aa20.14■□□□□ 0.81
LIMS3-206ENST00000631420 KIF1AQ12756 1690 aa20.13■□□□□ 0.81
LIMS3-206ENST00000631420 NUTM2GQ5VZR2 741 aa20.12■□□□□ 0.81
LIMS3-206ENST00000631420 TTC21AQ8NDW8 1320 aa20.12■□□□□ 0.81
LIMS3-206ENST00000631420 SCAF1Q9H7N4 1312 aaKnown RBP20.11■□□□□ 0.81
LIMS3-206ENST00000631420 MORC1Q86VD1 984 aa20.11■□□□□ 0.81
LIMS3-206ENST00000631420 ABTB2Q8N961 1025 aa20.11■□□□□ 0.81
LIMS3-206ENST00000631420 BRD4O60885 1362 aaPredicted RBP20.1■□□□□ 0.81
LIMS3-206ENST00000631420 NRKQ7Z2Y5 1582 aa20.1■□□□□ 0.81
LIMS3-206ENST00000631420 SOS2Q07890 1332 aaPredicted RBP20.1■□□□□ 0.81
LIMS3-206ENST00000631420 PARD3Q8TEW0 1356 aa20.09■□□□□ 0.81
LIMS3-206ENST00000631420 TNNT2P45379 298 aaPredicted RBP20.09■□□□□ 0.81
LIMS3-206ENST00000631420 RALBP1Q15311 655 aa20.09■□□□□ 0.81
LIMS3-206ENST00000631420 LMOD2Q6P5Q4 547 aa20.09■□□□□ 0.81
LIMS3-206ENST00000631420 PXDNQ92626 1479 aa20.09■□□□□ 0.81
LIMS3-206ENST00000631420 NSD2O96028 1365 aa20.09■□□□□ 0.81
LIMS3-206ENST00000631420 NLRP6P59044 892 aa20.08■□□□□ 0.81
LIMS3-206ENST00000631420 COG3Q96JB2 828 aa20.08■□□□□ 0.81
LIMS3-206ENST00000631420 FBLN1P23142 703 aa20.08■□□□□ 0.8
LIMS3-206ENST00000631420 ROBO1Q9Y6N7 1651 aa20.08■□□□□ 0.8
LIMS3-206ENST00000631420 SBNO1A3KN83 1393 aa20.06■□□□□ 0.8
LIMS3-206ENST00000631420 SPATA31A3Q5VYP0 1347 aa20.06■□□□□ 0.8
LIMS3-206ENST00000631420 USP31Q70CQ4 1352 aa20.06■□□□□ 0.8
LIMS3-206ENST00000631420 PLEKHG5O94827 1062 aa20.05■□□□□ 0.8
LIMS3-206ENST00000631420 PPP2R1AP30153 589 aa20.04■□□□□ 0.8
LIMS3-206ENST00000631420 TRPM3Q9HCF6 1732 aaPredicted RBP20.04■□□□□ 0.8
LIMS3-206ENST00000631420 OVOS2A0A0J9YW53 1432 aa20.03■□□□□ 0.8
LIMS3-206ENST00000631420 OVOS2Q6IE36 1432 aa20.03■□□□□ 0.8
LIMS3-206ENST00000631420 CCDC184Q52MB2 194 aa20.03■□□□□ 0.8
LIMS3-206ENST00000631420 NLRP13Q86W25 1043 aa20.03■□□□□ 0.8
LIMS3-206ENST00000631420 PIK3C2AO00443 1686 aa20.03■□□□□ 0.8
LIMS3-206ENST00000631420 NHSL1Q5SYE7 1610 aa20.02■□□□□ 0.8
LIMS3-206ENST00000631420 TNS3Q68CZ2 1445 aa20.02■□□□□ 0.8
LIMS3-206ENST00000631420 MYBBP1AQ9BQG0 1328 aaKnown RBP20.02■□□□□ 0.8
LIMS3-206ENST00000631420 SOX12O15370 315 aa20.02■□□□□ 0.8
LIMS3-206ENST00000631420 KIF20BQ96Q89 1820 aa20.02■□□□□ 0.79
LIMS3-206ENST00000631420 AHDC1Q5TGY3 1603 aaPredicted RBP20■□□□□ 0.79
LIMS3-206ENST00000631420 CABLES1Q8TDN4 633 aa19.99■□□□□ 0.79
LIMS3-206ENST00000631420 LRRC59Q96AG4 307 aaKnown RBP19.99■□□□□ 0.79
LIMS3-206ENST00000631420 ALS2Q96Q42 1657 aa19.97■□□□□ 0.79
LIMS3-206ENST00000631420 MTHFSP49914 203 aa19.97■□□□□ 0.79
LIMS3-206ENST00000631420 RRS1Q15050 365 aaKnown RBP19.97■□□□□ 0.79
LIMS3-206ENST00000631420 POLKQ9UBT6 870 aa19.97■□□□□ 0.79
LIMS3-206ENST00000631420 USP19O94966 1318 aa19.97■□□□□ 0.79
LIMS3-206ENST00000631420 GCP02774 474 aa19.96■□□□□ 0.79
LIMS3-206ENST00000631420 ARHGEF10O15013 1369 aa19.96■□□□□ 0.79
LIMS3-206ENST00000631420 CCER2I3L3R5 266 aa19.95■□□□□ 0.78
LIMS3-206ENST00000631420 ANKRD26Q9UPS8 1709 aa19.95■□□□□ 0.78
LIMS3-206ENST00000631420 EMILIN1Q9Y6C2 1016 aa19.95■□□□□ 0.78
LIMS3-206ENST00000631420 AATKQ6ZMQ8 1374 aa19.94■□□□□ 0.78
LIMS3-206ENST00000631420 MARF1Q9Y4F3 1742 aaKnown RBP19.94■□□□□ 0.78
LIMS3-206ENST00000631420 PPM1GO15355 546 aaPredicted RBP19.93■□□□□ 0.78
LIMS3-206ENST00000631420 KCNH5Q8NCM2 988 aa19.93■□□□□ 0.78
LIMS3-206ENST00000631420 MRS2Q9HD23 443 aa19.93■□□□□ 0.78
LIMS3-206ENST00000631420 MED1Q15648 1581 aaPredicted RBP19.93■□□□□ 0.78
LIMS3-206ENST00000631420 PHLPP1O60346 1717 aa19.92■□□□□ 0.78
LIMS3-206ENST00000631420 HSPA1LP34931 641 aa19.92■□□□□ 0.78
LIMS3-206ENST00000631420 COL16A1Q07092 1604 aaPredicted RBP19.91■□□□□ 0.78
LIMS3-206ENST00000631420 MAP3K19Q56UN5 1328 aa19.91■□□□□ 0.78
LIMS3-206ENST00000631420 ZC3H6P61129 1189 aaKnown RBP19.91■□□□□ 0.78
LIMS3-206ENST00000631420 USP54Q70EL1 1684 aa19.9■□□□□ 0.78
LIMS3-206ENST00000631420 PNPLA6Q8IY17 1366 aa19.9■□□□□ 0.78
LIMS3-206ENST00000631420 SLIT3O75094 1523 aa19.9■□□□□ 0.78
LIMS3-206ENST00000631420 ZBTB7CA1YPR0 619 aa19.9■□□□□ 0.78
LIMS3-206ENST00000631420 ARHGEF25Q86VW2 580 aa19.88■□□□□ 0.77
LIMS3-206ENST00000631420 NFAT5O94916 1531 aa19.88■□□□□ 0.77
LIMS3-206ENST00000631420 AMPHP49418 695 aa19.87■□□□□ 0.77
LIMS3-206ENST00000631420 HAP1P54257 671 aaPredicted RBP19.87■□□□□ 0.77
LIMS3-206ENST00000631420 HSP90AB2PQ58FF8 381 aa19.86■□□□□ 0.77
LIMS3-206ENST00000631420 SMG6Q86US8 1419 aaKnown RBP19.85■□□□□ 0.77
LIMS3-206ENST00000631420 MAP2P11137 1827 aaKnown RBP19.85■□□□□ 0.77
LIMS3-206ENST00000631420 HOXC9P31274 260 aa19.84■□□□□ 0.77
LIMS3-206ENST00000631420 PNISRQ8TF01 805 aaKnown RBP19.84■□□□□ 0.77
LIMS3-206ENST00000631420 CFAP53Q96M91 514 aa19.84■□□□□ 0.77
LIMS3-206ENST00000631420 CHRNA2Q15822 529 aa19.83■□□□□ 0.77
LIMS3-206ENST00000631420 IP6K1Q92551 441 aa19.83■□□□□ 0.76
LIMS3-206ENST00000631420 AXIN2Q9Y2T1 843 aa19.83■□□□□ 0.76
LIMS3-206ENST00000631420 KIAA0232Q92628 1395 aa19.82■□□□□ 0.76
LIMS3-206ENST00000631420 JCADQ9P266 1359 aa19.82■□□□□ 0.76
LIMS3-206ENST00000631420 NUTM2BA6NNL0 878 aaPredicted RBP19.82■□□□□ 0.76
LIMS3-206ENST00000631420 NUTM2EB1AL46 878 aaPredicted RBP19.82■□□□□ 0.76
LIMS3-206ENST00000631420 INSRP06213 1382 aa19.82■□□□□ 0.76
LIMS3-206ENST00000631420 NUTM2AQ8IVF1 878 aaPredicted RBP19.82■□□□□ 0.76
LIMS3-206ENST00000631420 FAM9BQ8IZU0 186 aa19.82■□□□□ 0.76
LIMS3-206ENST00000631420 PEAK1Q9H792 1746 aa19.82■□□□□ 0.76
LIMS3-206ENST00000631420 PHRF1Q9P1Y6 1649 aaKnown RBP19.82■□□□□ 0.76
LIMS3-206ENST00000631420 CRYBG1Q9Y4K1 1723 aa19.82■□□□□ 0.76
LIMS3-206ENST00000631420 FLT4P35916 1363 aa19.81■□□□□ 0.76
LIMS3-206ENST00000631420 COL3A1P02461 1466 aaPredicted RBP19.8■□□□□ 0.76
LIMS3-206ENST00000631420 DIAPH1O60610 1272 aaKnown RBP19.8■□□□□ 0.76
LIMS3-206ENST00000631420 CDK12Q9NYV4 1490 aaPredicted RBP19.8■□□□□ 0.76
LIMS3-206ENST00000631420 CPDO75976 1380 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms