RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 BCL2L13Q9BXK5 485 aa16.35■□□□□ 0.21
LINC00540-203ENST00000631321 NFKBIBQ15653 356 aa16.35■□□□□ 0.21
LINC00540-203ENST00000631321 ZKSCAN2Q63HK3 967 aa16.35■□□□□ 0.21
LINC00540-203ENST00000631321 RWDD1Q9H446 243 aaPredicted RBP16.35■□□□□ 0.21
LINC00540-203ENST00000631321 POGKQ9P215 609 aa16.35■□□□□ 0.21
LINC00540-203ENST00000631321 HDGFL2Q7Z4V5 671 aaPredicted RBP16.33■□□□□ 0.2
LINC00540-203ENST00000631321 PPP6R1Q9UPN7 881 aa16.33■□□□□ 0.2
LINC00540-203ENST00000631321 DLC1Q96QB1 1528 aa16.33■□□□□ 0.2
LINC00540-203ENST00000631321 REREQ9P2R6 1566 aa16.33■□□□□ 0.2
LINC00540-203ENST00000631321 U2SURPO15042 1029 aaKnown RBP16.33■□□□□ 0.2
LINC00540-203ENST00000631321 FBXO31Q5XUX0 539 aaPredicted RBP16.33■□□□□ 0.2
LINC00540-203ENST00000631321 DZIP1LQ8IYY4 767 aaKnown RBP16.33■□□□□ 0.2
LINC00540-203ENST00000631321 CDC42BPGQ6DT37 1551 aa16.32■□□□□ 0.2
LINC00540-203ENST00000631321 CDK19Q9BWU1 502 aa16.32■□□□□ 0.2
LINC00540-203ENST00000631321 PDZRN3Q9UPQ7 1066 aa16.32■□□□□ 0.2
LINC00540-203ENST00000631321 TSR2Q969E8 191 aaKnown RBP16.31■□□□□ 0.2
LINC00540-203ENST00000631321 PNNQ9H307 717 aaKnown RBP16.31■□□□□ 0.2
LINC00540-203ENST00000631321 AGLP35573 1532 aa16.31■□□□□ 0.2
LINC00540-203ENST00000631321 SEC24BO95487 1268 aa16.31■□□□□ 0.2
LINC00540-203ENST00000631321 EXOSC9Q06265 439 aaKnown RBP16.31■□□□□ 0.2
LINC00540-203ENST00000631321 DIAPH1O60610 1272 aaKnown RBP16.3■□□□□ 0.2
LINC00540-203ENST00000631321 FTSJ3Q8IY81 847 aaKnown RBP16.29■□□□□ 0.2
LINC00540-203ENST00000631321 ATP7BP35670 1465 aa16.29■□□□□ 0.2
LINC00540-203ENST00000631321 SMC4Q9NTJ3 1288 aa16.29■□□□□ 0.2
LINC00540-203ENST00000631321 SSH1Q8WYL5 1049 aa16.28■□□□□ 0.2
LINC00540-203ENST00000631321 CABP1Q9NZU7 370 aa16.28■□□□□ 0.2
LINC00540-203ENST00000631321 FCHSD2O94868 740 aa16.28■□□□□ 0.2
LINC00540-203ENST00000631321 TRIM27P14373 513 aa16.28■□□□□ 0.2
LINC00540-203ENST00000631321 HDAC1Q13547 482 aaPredicted RBP16.28■□□□□ 0.2
LINC00540-203ENST00000631321 A2ML1A8K2U0 1454 aa16.28■□□□□ 0.2
LINC00540-203ENST00000631321 RIPK4P57078 832 aa16.27■□□□□ 0.2
LINC00540-203ENST00000631321 KIF20BQ96Q89 1820 aa16.27■□□□□ 0.2
LINC00540-203ENST00000631321 ATF7IPQ6VMQ6 1270 aa16.27■□□□□ 0.19
LINC00540-203ENST00000631321 SPATA31D1Q6ZQQ2 1576 aa16.27■□□□□ 0.19
LINC00540-203ENST00000631321 DDX19BQ9UMR2 479 aa16.27■□□□□ 0.19
LINC00540-203ENST00000631321 TBC1D32Q96NH3 1257 aa16.25■□□□□ 0.19
LINC00540-203ENST00000631321 SENP3Q9H4L4 574 aaPredicted RBP16.25■□□□□ 0.19
LINC00540-203ENST00000631321 FAM135BQ49AJ0 1406 aa16.25■□□□□ 0.19
LINC00540-203ENST00000631321 BECN1Q14457 450 aa16.25■□□□□ 0.19
LINC00540-203ENST00000631321 STAG3Q9UJ98 1225 aa16.25■□□□□ 0.19
LINC00540-203ENST00000631321 SETD1AO15047 1707 aaKnown RBP16.24■□□□□ 0.19
LINC00540-203ENST00000631321 PPIP5K1Q6PFW1 1433 aa16.24■□□□□ 0.19
LINC00540-203ENST00000631321 RIMS2Q9UQ26 1411 aa16.24■□□□□ 0.19
LINC00540-203ENST00000631321 GSE1Q14687 1217 aa16.24■□□□□ 0.19
LINC00540-203ENST00000631321 ALDH1L2Q3SY69 923 aa16.24■□□□□ 0.19
LINC00540-203ENST00000631321 RSPH6AQ9H0K4 717 aa16.24■□□□□ 0.19
LINC00540-203ENST00000631321 KIF16BQ96L93 1317 aa16.24■□□□□ 0.19
LINC00540-203ENST00000631321 LRRC7Q96NW7 1537 aa16.24■□□□□ 0.19
LINC00540-203ENST00000631321 BRPF1P55201 1214 aaPredicted RBP16.24■□□□□ 0.19
LINC00540-203ENST00000631321 POLKQ9UBT6 870 aa16.24■□□□□ 0.19
LINC00540-203ENST00000631321 ZNF428Q96B54 188 aa16.23■□□□□ 0.19
LINC00540-203ENST00000631321 UPF2Q9HAU5 1272 aaKnown RBP16.23■□□□□ 0.19
LINC00540-203ENST00000631321 NOB1Q9ULX3 412 aaKnown RBP16.23■□□□□ 0.19
LINC00540-203ENST00000631321 CPSF1Q10570 1443 aaKnown RBP16.23■□□□□ 0.19
LINC00540-203ENST00000631321 DIP2BQ9P265 1576 aa16.22■□□□□ 0.19
LINC00540-203ENST00000631321 RIMBP3CA6NJZ7 1639 aa16.22■□□□□ 0.19
LINC00540-203ENST00000631321 RIMBP3BA6NNM3 1639 aa16.22■□□□□ 0.19
LINC00540-203ENST00000631321 RIMBP3Q9UFD9 1639 aa16.22■□□□□ 0.19
LINC00540-203ENST00000631321 IPO8O15397 1037 aaKnown RBP16.22■□□□□ 0.19
LINC00540-203ENST00000631321 SMC5Q8IY18 1101 aa16.21■□□□□ 0.19
LINC00540-203ENST00000631321 ZBTB40Q9NUA8 1239 aa16.21■□□□□ 0.19
LINC00540-203ENST00000631321 FAM69CQ0P6D2 419 aa16.21■□□□□ 0.19
LINC00540-203ENST00000631321 ITPRIPQ8IWB1 547 aa16.21■□□□□ 0.19
LINC00540-203ENST00000631321 EDC4Q6P2E9 1401 aaKnown RBP16.21■□□□□ 0.18
LINC00540-203ENST00000631321 WAPLQ7Z5K2 1190 aa16.2■□□□□ 0.18
LINC00540-203ENST00000631321 FRAT2O75474 233 aaPredicted RBP16.2■□□□□ 0.18
LINC00540-203ENST00000631321 TMEM57Q8N5G2 664 aa16.2■□□□□ 0.18
LINC00540-203ENST00000631321 PRKAR2BP31323 418 aa16.19■□□□□ 0.18
LINC00540-203ENST00000631321 NFE2L2Q16236 605 aa16.19■□□□□ 0.18
LINC00540-203ENST00000631321 CYB5RLQ6IPT4 315 aa16.19■□□□□ 0.18
LINC00540-203ENST00000631321 AATKQ6ZMQ8 1374 aa16.19■□□□□ 0.18
LINC00540-203ENST00000631321 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.18■□□□□ 0.18
LINC00540-203ENST00000631321 CDK12Q9NYV4 1490 aaPredicted RBP16.18■□□□□ 0.18
LINC00540-203ENST00000631321 NRXN3Q9Y4C0 1643 aa16.18■□□□□ 0.18
LINC00540-203ENST00000631321 WASLO00401 505 aaPredicted RBP16.17■□□□□ 0.18
LINC00540-203ENST00000631321 CALD1Q05682 793 aaKnown RBP16.17■□□□□ 0.18
LINC00540-203ENST00000631321 SIRT1Q96EB6 747 aa16.17■□□□□ 0.18
LINC00540-203ENST00000631321 ANTXR1Q9H6X2 564 aa16.17■□□□□ 0.18
LINC00540-203ENST00000631321 IL13P35225 146 aa16.17■□□□□ 0.18
LINC00540-203ENST00000631321 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.16■□□□□ 0.18
LINC00540-203ENST00000631321 PIK3R4Q99570 1358 aa16.16■□□□□ 0.18
LINC00540-203ENST00000631321 ARHGAP45Q92619 1136 aa16.16■□□□□ 0.18
LINC00540-203ENST00000631321 TECPR2O15040 1411 aa16.15■□□□□ 0.18
LINC00540-203ENST00000631321 ZNF853P0CG23 659 aa16.15■□□□□ 0.18
LINC00540-203ENST00000631321 PHACTR3Q96KR7 559 aa16.15■□□□□ 0.18
LINC00540-203ENST00000631321 TBC1D2Q9BYX2 928 aa16.15■□□□□ 0.18
LINC00540-203ENST00000631321 IFT57Q9NWB7 429 aa16.15■□□□□ 0.18
LINC00540-203ENST00000631321 METP08581 1390 aa16.14■□□□□ 0.17
LINC00540-203ENST00000631321 FBLN1P23142 703 aa16.14■□□□□ 0.17
LINC00540-203ENST00000631321 NUCB1Q02818 461 aa16.14■□□□□ 0.17
LINC00540-203ENST00000631321 PTCH1Q13635 1447 aa16.14■□□□□ 0.17
LINC00540-203ENST00000631321 VAMP4O75379 141 aa16.14■□□□□ 0.17
LINC00540-203ENST00000631321 MRPL50Q8N5N7 158 aaKnown RBP16.13■□□□□ 0.17
LINC00540-203ENST00000631321 EMILIN1Q9Y6C2 1016 aa16.13■□□□□ 0.17
LINC00540-203ENST00000631321 GNAI1P63096 354 aa16.13■□□□□ 0.17
LINC00540-203ENST00000631321 KNDC1Q76NI1 1749 aa16.12■□□□□ 0.17
LINC00540-203ENST00000631321 NME9Q86XW9 330 aa16.12■□□□□ 0.17
LINC00540-203ENST00000631321 CHMP4BQ9H444 224 aaKnown RBP16.12■□□□□ 0.17
LINC00540-203ENST00000631321 C22orf23Q9BZE7 217 aa16.11■□□□□ 0.17
LINC00540-203ENST00000631321 MAP2P11137 1827 aaKnown RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms