RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 B4GALNT3Q6L9W6 998 aa28.98■■■□□ 2.23
PNKP-220ENST00000627232 ZNF692Q9BU19 519 aaPredicted RBP28.98■■■□□ 2.23
PNKP-220ENST00000627232 PRR36Q9H6K5 1346 aa28.96■■■□□ 2.23
PNKP-220ENST00000627232 AMOTL2Q9Y2J4 779 aa28.95■■■□□ 2.23
PNKP-220ENST00000627232 NKTRP30414 1462 aaKnown RBP28.95■■■□□ 2.23
PNKP-220ENST00000627232 PIK3R4Q99570 1358 aa28.95■■■□□ 2.22
PNKP-220ENST00000627232 CCDC27Q2M243 656 aa28.94■■■□□ 2.22
PNKP-220ENST00000627232 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.94■■■□□ 2.22
PNKP-220ENST00000627232 WWC1Q8IX03 1113 aa28.94■■■□□ 2.22
PNKP-220ENST00000627232 PHF23Q9BUL5 403 aaPredicted RBP28.94■■■□□ 2.22
PNKP-220ENST00000627232 DNAJC5Q9H3Z4 198 aa28.94■■■□□ 2.22
PNKP-220ENST00000627232 MAP2P11137 1827 aaKnown RBP28.94■■■□□ 2.22
PNKP-220ENST00000627232 TCP11L2Q8N4U5 519 aa28.94■■■□□ 2.22
PNKP-220ENST00000627232 U2AF1L5P0DN76 240 aaPredicted RBP28.93■■■□□ 2.22
PNKP-220ENST00000627232 U2AF1Q01081 240 aaKnown RBP eCLIP28.93■■■□□ 2.229e-9■■■■■ 30
PNKP-220ENST00000627232 NRKQ7Z2Y5 1582 aa28.91■■■□□ 2.22
PNKP-220ENST00000627232 SETD1BQ9UPS6 1966 aaKnown RBP28.91■■■□□ 2.22
PNKP-220ENST00000627232 PLEKHG3A1L390 1219 aa28.9■■■□□ 2.22
PNKP-220ENST00000627232 CCDC136Q96JN2 1154 aa28.9■■■□□ 2.22
PNKP-220ENST00000627232 AATKQ6ZMQ8 1374 aa28.9■■■□□ 2.22
PNKP-220ENST00000627232 WDR63Q8IWG1 891 aa28.89■■■□□ 2.22
PNKP-220ENST00000627232 DIAPH1O60610 1272 aaKnown RBP28.89■■■□□ 2.21
PNKP-220ENST00000627232 SPINK5Q9NQ38 1064 aaPredicted RBP28.89■■■□□ 2.21
PNKP-220ENST00000627232 NCKAP5LQ9HCH0 1330 aa28.87■■■□□ 2.21
PNKP-220ENST00000627232 PNNQ9H307 717 aaKnown RBP28.86■■■□□ 2.21
PNKP-220ENST00000627232 POLKQ9UBT6 870 aa28.86■■■□□ 2.21
PNKP-220ENST00000627232 NME9Q86XW9 330 aa28.85■■■□□ 2.21
PNKP-220ENST00000627232 EXOC6Q8TAG9 804 aa28.85■■■□□ 2.21
PNKP-220ENST00000627232 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.84■■■□□ 2.21
PNKP-220ENST00000627232 CDK12Q9NYV4 1490 aaPredicted RBP28.84■■■□□ 2.21
PNKP-220ENST00000627232 U2SURPO15042 1029 aaKnown RBP28.84■■■□□ 2.21
PNKP-220ENST00000627232 COG3Q96JB2 828 aa28.84■■■□□ 2.21
PNKP-220ENST00000627232 PLEKHF1Q96S99 279 aa28.84■■■□□ 2.21
PNKP-220ENST00000627232 DMRT2Q9Y5R5 561 aa28.84■■■□□ 2.21
PNKP-220ENST00000627232 CHD2O14647 1828 aaKnown RBP28.82■■■□□ 2.2
PNKP-220ENST00000627232 ANKLE2Q86XL3 938 aa28.81■■■□□ 2.2
PNKP-220ENST00000627232 RRP7AQ9Y3A4 280 aaKnown RBP28.81■■■□□ 2.2
PNKP-220ENST00000627232 ACEP12821 1306 aa28.8■■■□□ 2.2
PNKP-220ENST00000627232 USP6P35125 1406 aa28.8■■■□□ 2.2
PNKP-220ENST00000627232 PLIN1O60240 522 aa28.79■■■□□ 2.2
PNKP-220ENST00000627232 NEUROD2Q15784 382 aa28.79■■■□□ 2.2
PNKP-220ENST00000627232 TTC21BQ7Z4L5 1316 aa28.79■■■□□ 2.2
PNKP-220ENST00000627232 NALCNQ8IZF0 1738 aa28.78■■■□□ 2.2
PNKP-220ENST00000627232 ANKARQ7Z5J8 1434 aa28.78■■■□□ 2.2
PNKP-220ENST00000627232 MAPK8IP3Q9UPT6 1336 aa28.78■■■□□ 2.2
PNKP-220ENST00000627232 FCHSD2O94868 740 aa28.77■■■□□ 2.2
PNKP-220ENST00000627232 FMN2Q9NZ56 1722 aa28.77■■■□□ 2.2
PNKP-220ENST00000627232 RGPD8O14715 1765 aaPredicted RBP28.76■■■□□ 2.19
PNKP-220ENST00000627232 SSH2Q76I76 1423 aa28.76■■■□□ 2.19
PNKP-220ENST00000627232 TMPOP42166 694 aaKnown RBP28.74■■■□□ 2.19
PNKP-220ENST00000627232 CRBNQ96SW2 442 aa28.74■■■□□ 2.19
PNKP-220ENST00000627232 ZRANB1Q9UGI0 708 aa28.74■■■□□ 2.19
PNKP-220ENST00000627232 LRRC7Q96NW7 1537 aa28.74■■■□□ 2.19
PNKP-220ENST00000627232 OVOS2A0A0J9YW53 1432 aa28.74■■■□□ 2.19
PNKP-220ENST00000627232 OVOS2Q6IE36 1432 aa28.74■■■□□ 2.19
PNKP-220ENST00000627232 KCNA6P17658 529 aa28.73■■■□□ 2.19
PNKP-220ENST00000627232 MYH16Q9H6N6 1097 aa28.73■■■□□ 2.19
PNKP-220ENST00000627232 TTC21AQ8NDW8 1320 aa28.72■■■□□ 2.19
PNKP-220ENST00000627232 EMILIN1Q9Y6C2 1016 aa28.72■■■□□ 2.19
PNKP-220ENST00000627232 PPM1GO15355 546 aaPredicted RBP28.7■■■□□ 2.19
PNKP-220ENST00000627232 FBLN1P23142 703 aa28.7■■■□□ 2.19
PNKP-220ENST00000627232 IL13P35225 146 aa28.69■■■□□ 2.18
PNKP-220ENST00000627232 RSPH6AQ9H0K4 717 aa28.69■■■□□ 2.18
PNKP-220ENST00000627232 IL16Q14005 1332 aa28.69■■■□□ 2.18
PNKP-220ENST00000627232 NUTM2FA1L443 756 aa28.69■■■□□ 2.18
PNKP-220ENST00000627232 USP31Q70CQ4 1352 aa28.68■■■□□ 2.18
PNKP-220ENST00000627232 C20orf194Q5TEA3 1177 aa28.67■■■□□ 2.18
PNKP-220ENST00000627232 TRIM35Q9UPQ4 493 aa28.67■■■□□ 2.18
PNKP-220ENST00000627232 NEFMP07197 916 aa28.66■■■□□ 2.18
PNKP-220ENST00000627232 CT47B1P0C2W7 299 aaPredicted RBP28.64■■■□□ 2.18
PNKP-220ENST00000627232 RBM19Q9Y4C8 960 aaKnown RBP28.64■■■□□ 2.18
PNKP-220ENST00000627232 NPHP4O75161 1426 aaPredicted RBP28.64■■■□□ 2.17
PNKP-220ENST00000627232 BCAR3O75815 825 aa28.64■■■□□ 2.17
PNKP-220ENST00000627232 PRKAR2BP31323 418 aa28.63■■■□□ 2.17
PNKP-220ENST00000627232 RIPK4P57078 832 aa28.63■■■□□ 2.17
PNKP-220ENST00000627232 USP54Q70EL1 1684 aa28.63■■■□□ 2.17
PNKP-220ENST00000627232 RRS1Q15050 365 aaKnown RBP28.62■■■□□ 2.17
PNKP-220ENST00000627232 NGDNQ8NEJ9 315 aaKnown RBP28.62■■■□□ 2.17
PNKP-220ENST00000627232 PDE3AQ14432 1141 aa28.61■■■□□ 2.17
PNKP-220ENST00000627232 PMFBP1Q8TBY8 1022 aa28.6■■■□□ 2.17
PNKP-220ENST00000627232 RARSP54136 660 aaKnown RBP28.59■■■□□ 2.17
PNKP-220ENST00000627232 PIK3C2AO00443 1686 aa28.59■■■□□ 2.17
PNKP-220ENST00000627232 PEAK1Q9H792 1746 aa28.58■■■□□ 2.17
PNKP-220ENST00000627232 NFE2L2Q16236 605 aa28.58■■■□□ 2.17
PNKP-220ENST00000627232 FANCIQ9NVI1 1328 aa28.57■■■□□ 2.16
PNKP-220ENST00000627232 NWD1Q149M9 1564 aa28.56■■■□□ 2.16
PNKP-220ENST00000627232 ADGRL3Q9HAR2 1447 aa28.56■■■□□ 2.16
PNKP-220ENST00000627232 RGPD1P0DJD0 1748 aa28.54■■■□□ 2.16
PNKP-220ENST00000627232 HMOX1P09601 288 aa28.54■■■□□ 2.16
PNKP-220ENST00000627232 DLG5Q8TDM6 1919 aa28.52■■■□□ 2.16
PNKP-220ENST00000627232 MARF1Q9Y4F3 1742 aaKnown RBP28.51■■■□□ 2.15
PNKP-220ENST00000627232 CALD1Q05682 793 aaKnown RBP28.51■■■□□ 2.15
PNKP-220ENST00000627232 PHACTR3Q96KR7 559 aa28.51■■■□□ 2.15
PNKP-220ENST00000627232 EIF4A2Q14240 407 aaKnown RBP28.5■■■□□ 2.15
PNKP-220ENST00000627232 CANXP27824 592 aaKnown RBP28.49■■■□□ 2.15
PNKP-220ENST00000627232 LMOD3Q0VAK6 560 aa28.48■■■□□ 2.15
PNKP-220ENST00000627232 SBNO1A3KN83 1393 aa28.48■■■□□ 2.15
PNKP-220ENST00000627232 EXOSC9Q06265 439 aaKnown RBP28.48■■■□□ 2.15
PNKP-220ENST00000627232 TSR2Q969E8 191 aaKnown RBP28.48■■■□□ 2.15
PNKP-220ENST00000627232 KDM2BQ8NHM5 1336 aa28.47■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms