RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 CCDC136Q96JN2 1154 aa25.8■■□□□ 1.72
CHRNA4-209ENST00000627000 ADGRB2O60241 1585 aa25.8■■□□□ 1.72
CHRNA4-209ENST00000627000 EDC4Q6P2E9 1401 aaKnown RBP25.8■■□□□ 1.72
CHRNA4-209ENST00000627000 AMOTL2Q9Y2J4 779 aa25.8■■□□□ 1.72
CHRNA4-209ENST00000627000 TBX22Q9Y458 520 aa25.8■■□□□ 1.72
CHRNA4-209ENST00000627000 MON2Q7Z3U7 1717 aa25.79■■□□□ 1.72
CHRNA4-209ENST00000627000 CEP170BQ9Y4F5 1589 aaPredicted RBP25.78■■□□□ 1.72
CHRNA4-209ENST00000627000 E9PSI1 815 aa25.78■■□□□ 1.72
CHRNA4-209ENST00000627000 NME9Q86XW9 330 aa25.78■■□□□ 1.72
CHRNA4-209ENST00000627000 AKAP12Q02952 1782 aa25.78■■□□□ 1.72
CHRNA4-209ENST00000627000 U2SURPO15042 1029 aaKnown RBP25.78■■□□□ 1.72
CHRNA4-209ENST00000627000 ZRANB1Q9UGI0 708 aa25.78■■□□□ 1.72
CHRNA4-209ENST00000627000 ITSN1Q15811 1721 aa25.77■■□□□ 1.72
CHRNA4-209ENST00000627000 NUTM2FA1L443 756 aa25.77■■□□□ 1.72
CHRNA4-209ENST00000627000 NKTRP30414 1462 aaKnown RBP25.75■■□□□ 1.71
CHRNA4-209ENST00000627000 MAP2P11137 1827 aaKnown RBP25.74■■□□□ 1.71
CHRNA4-209ENST00000627000 PNPLA6Q8IY17 1366 aa25.74■■□□□ 1.71
CHRNA4-209ENST00000627000 PHF23Q9BUL5 403 aaPredicted RBP25.73■■□□□ 1.71
CHRNA4-209ENST00000627000 POLKQ9UBT6 870 aa25.73■■□□□ 1.71
CHRNA4-209ENST00000627000 DIP2AQ14689 1571 aa25.73■■□□□ 1.71
CHRNA4-209ENST00000627000 TOPAZ1Q8N9V7 1692 aa25.72■■□□□ 1.71
CHRNA4-209ENST00000627000 C20orf194Q5TEA3 1177 aa25.72■■□□□ 1.71
CHRNA4-209ENST00000627000 PPM1GO15355 546 aaPredicted RBP25.72■■□□□ 1.71
CHRNA4-209ENST00000627000 DIAPH1O60610 1272 aaKnown RBP25.72■■□□□ 1.71
CHRNA4-209ENST00000627000 ADAMTSL3P82987 1691 aa25.71■■□□□ 1.71
CHRNA4-209ENST00000627000 PLEKHF1Q96S99 279 aa25.71■■□□□ 1.71
CHRNA4-209ENST00000627000 PTCH1Q13635 1447 aa25.7■■□□□ 1.7
CHRNA4-209ENST00000627000 CRBNQ96SW2 442 aa25.7■■□□□ 1.7
CHRNA4-209ENST00000627000 ZNF692Q9BU19 519 aaPredicted RBP25.69■■□□□ 1.7
CHRNA4-209ENST00000627000 DNAJC5Q9H3Z4 198 aa25.69■■□□□ 1.7
CHRNA4-209ENST00000627000 EMILIN1Q9Y6C2 1016 aa25.68■■□□□ 1.7
CHRNA4-209ENST00000627000 XRN1Q8IZH2 1706 aaKnown RBP25.68■■□□□ 1.7
CHRNA4-209ENST00000627000 ACEP12821 1306 aa25.68■■□□□ 1.7
CHRNA4-209ENST00000627000 CCDC27Q2M243 656 aa25.68■■□□□ 1.7
CHRNA4-209ENST00000627000 WDR63Q8IWG1 891 aa25.66■■□□□ 1.7
CHRNA4-209ENST00000627000 COG3Q96JB2 828 aa25.66■■□□□ 1.7
CHRNA4-209ENST00000627000 PLEKHG3A1L390 1219 aa25.65■■□□□ 1.7
CHRNA4-209ENST00000627000 RBM19Q9Y4C8 960 aaKnown RBP25.65■■□□□ 1.7
CHRNA4-209ENST00000627000 NRKQ7Z2Y5 1582 aa25.65■■□□□ 1.7
CHRNA4-209ENST00000627000 BCAR3O75815 825 aa25.64■■□□□ 1.7
CHRNA4-209ENST00000627000 KCNA6P17658 529 aa25.64■■□□□ 1.7
CHRNA4-209ENST00000627000 ZNF142P52746 1687 aaPredicted RBP25.63■■□□□ 1.69
CHRNA4-209ENST00000627000 RGPD8O14715 1765 aaPredicted RBP25.63■■□□□ 1.69
CHRNA4-209ENST00000627000 TTC21BQ7Z4L5 1316 aa25.63■■□□□ 1.69
CHRNA4-209ENST00000627000 AATKQ6ZMQ8 1374 aa25.62■■□□□ 1.69
CHRNA4-209ENST00000627000 TMPOP42166 694 aaKnown RBP25.62■■□□□ 1.69
CHRNA4-209ENST00000627000 RRS1Q15050 365 aaKnown RBP25.62■■□□□ 1.69
CHRNA4-209ENST00000627000 NCBP3Q53F19 620 aaKnown RBP25.62■■□□□ 1.69
CHRNA4-209ENST00000627000 MAPK8IP3Q9UPT6 1336 aa25.62■■□□□ 1.69
CHRNA4-209ENST00000627000 USP6P35125 1406 aa25.61■■□□□ 1.69
CHRNA4-209ENST00000627000 PMFBP1Q8TBY8 1022 aa25.6■■□□□ 1.69
CHRNA4-209ENST00000627000 LRRC7Q96NW7 1537 aa25.6■■□□□ 1.69
CHRNA4-209ENST00000627000 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.59■■□□□ 1.69
CHRNA4-209ENST00000627000 CDK12Q9NYV4 1490 aaPredicted RBP25.59■■□□□ 1.69
CHRNA4-209ENST00000627000 ANKLE2Q86XL3 938 aa25.59■■□□□ 1.69
CHRNA4-209ENST00000627000 TRIM35Q9UPQ4 493 aa25.58■■□□□ 1.69
CHRNA4-209ENST00000627000 PIK3R4Q99570 1358 aa25.57■■□□□ 1.68
CHRNA4-209ENST00000627000 RSPH6AQ9H0K4 717 aa25.56■■□□□ 1.68
CHRNA4-209ENST00000627000 SETD1BQ9UPS6 1966 aaKnown RBP25.56■■□□□ 1.68
CHRNA4-209ENST00000627000 FCHSD2O94868 740 aa25.56■■□□□ 1.68
CHRNA4-209ENST00000627000 IL13P35225 146 aa25.56■■□□□ 1.68
CHRNA4-209ENST00000627000 PRKAR2BP31323 418 aa25.55■■□□□ 1.68
CHRNA4-209ENST00000627000 HMOX1P09601 288 aa25.55■■□□□ 1.68
CHRNA4-209ENST00000627000 OVOS2A0A0J9YW53 1432 aa25.54■■□□□ 1.68
CHRNA4-209ENST00000627000 OVOS2Q6IE36 1432 aa25.54■■□□□ 1.68
CHRNA4-209ENST00000627000 RIPK4P57078 832 aa25.54■■□□□ 1.68
CHRNA4-209ENST00000627000 SSH2Q76I76 1423 aa25.54■■□□□ 1.68
CHRNA4-209ENST00000627000 PNNQ9H307 717 aaKnown RBP25.54■■□□□ 1.68
CHRNA4-209ENST00000627000 CHD2O14647 1828 aaKnown RBP25.53■■□□□ 1.68
CHRNA4-209ENST00000627000 MYH16Q9H6N6 1097 aa25.52■■□□□ 1.68
CHRNA4-209ENST00000627000 NGDNQ8NEJ9 315 aaKnown RBP25.51■■□□□ 1.67
CHRNA4-209ENST00000627000 TSR2Q969E8 191 aaKnown RBP25.51■■□□□ 1.67
CHRNA4-209ENST00000627000 RARSP54136 660 aaKnown RBP25.5■■□□□ 1.67
CHRNA4-209ENST00000627000 PHACTR3Q96KR7 559 aa25.5■■□□□ 1.67
CHRNA4-209ENST00000627000 NALCNQ8IZF0 1738 aa25.49■■□□□ 1.67
CHRNA4-209ENST00000627000 FMN2Q9NZ56 1722 aa25.49■■□□□ 1.67
CHRNA4-209ENST00000627000 RBM33Q96EV2 1170 aaKnown RBP25.49■■□□□ 1.67
CHRNA4-209ENST00000627000 FANCIQ9NVI1 1328 aa25.49■■□□□ 1.67
CHRNA4-209ENST00000627000 SOX12O15370 315 aa25.46■■□□□ 1.67
CHRNA4-209ENST00000627000 ANKARQ7Z5J8 1434 aa25.46■■□□□ 1.67
CHRNA4-209ENST00000627000 BCL2L13Q9BXK5 485 aa25.46■■□□□ 1.67
CHRNA4-209ENST00000627000 TTC21AQ8NDW8 1320 aa25.45■■□□□ 1.66
CHRNA4-209ENST00000627000 PEAK1Q9H792 1746 aa25.45■■□□□ 1.66
CHRNA4-209ENST00000627000 USP31Q70CQ4 1352 aa25.45■■□□□ 1.66
CHRNA4-209ENST00000627000 NEFMP07197 916 aa25.44■■□□□ 1.66
CHRNA4-209ENST00000627000 FRAT1Q92837 279 aaPredicted RBP25.44■■□□□ 1.66
CHRNA4-209ENST00000627000 CANXP27824 592 aaKnown RBP25.44■■□□□ 1.66
CHRNA4-209ENST00000627000 EXOSC9Q06265 439 aaKnown RBP25.43■■□□□ 1.66
CHRNA4-209ENST00000627000 IL16Q14005 1332 aa25.43■■□□□ 1.66
CHRNA4-209ENST00000627000 EIF4A2Q14240 407 aaKnown RBP25.42■■□□□ 1.66
CHRNA4-209ENST00000627000 NFE2L2Q16236 605 aa25.42■■□□□ 1.66
CHRNA4-209ENST00000627000 NPHP4O75161 1426 aaPredicted RBP25.42■■□□□ 1.66
CHRNA4-209ENST00000627000 PIK3C2AO00443 1686 aa25.42■■□□□ 1.66
CHRNA4-209ENST00000627000 PANK1Q8TE04 598 aa25.42■■□□□ 1.66
CHRNA4-209ENST00000627000 PDE3AQ14432 1141 aa25.41■■□□□ 1.66
CHRNA4-209ENST00000627000 HSP90AB2PQ58FF8 381 aa25.4■■□□□ 1.66
CHRNA4-209ENST00000627000 TNNQ9UQP3 1299 aa25.39■■□□□ 1.66
CHRNA4-209ENST00000627000 KDM2BQ8NHM5 1336 aa25.38■■□□□ 1.65
CHRNA4-209ENST00000627000 THUMPD2Q9BTF0 503 aaKnown RBP25.38■■□□□ 1.65
CHRNA4-209ENST00000627000 DLG5Q8TDM6 1919 aa25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms