RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 APAF1O14727 1248 aa21.47■■□□□ 1.03
LDB3-208ENST00000623007 PLPPR3Q6T4P5 718 aa21.47■■□□□ 1.03
LDB3-208ENST00000623007 RRP1P56182 461 aaKnown RBP21.46■■□□□ 1.03
LDB3-208ENST00000623007 COL3A1P02461 1466 aaPredicted RBP21.46■■□□□ 1.03
LDB3-208ENST00000623007 SLFN5Q08AF3 891 aa21.45■■□□□ 1.02
LDB3-208ENST00000623007 COG3Q96JB2 828 aa21.45■■□□□ 1.02
LDB3-208ENST00000623007 IQSEC2Q5JU85 1478 aa21.45■■□□□ 1.02
LDB3-208ENST00000623007 DIAPH1O60610 1272 aaKnown RBP21.44■■□□□ 1.02
LDB3-208ENST00000623007 WDR63Q8IWG1 891 aa21.44■■□□□ 1.02
LDB3-208ENST00000623007 CCDC146Q8IYE0 955 aa21.44■■□□□ 1.02
LDB3-208ENST00000623007 TRMT2AQ8IZ69 625 aaKnown RBP21.44■■□□□ 1.02
LDB3-208ENST00000623007 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.44■■□□□ 1.02
LDB3-208ENST00000623007 TTC21AQ8NDW8 1320 aa21.43■■□□□ 1.02
LDB3-208ENST00000623007 CHD2O14647 1828 aaKnown RBP21.43■■□□□ 1.02
LDB3-208ENST00000623007 U2AF1L5P0DN76 240 aaPredicted RBP21.43■■□□□ 1.02
LDB3-208ENST00000623007 U2AF1Q01081 240 aaKnown RBP eCLIP21.43■■□□□ 1.02
LDB3-208ENST00000623007 DUSP27Q5VZP5 1158 aa21.43■■□□□ 1.02
LDB3-208ENST00000623007 CDCA7LQ96GN5 454 aa21.43■■□□□ 1.02
LDB3-208ENST00000623007 NRKQ7Z2Y5 1582 aa21.43■■□□□ 1.02
LDB3-208ENST00000623007 PRR36Q9H6K5 1346 aa21.42■■□□□ 1.02
LDB3-208ENST00000623007 CDK12Q9NYV4 1490 aaPredicted RBP21.42■■□□□ 1.02
LDB3-208ENST00000623007 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.42■■□□□ 1.02
LDB3-208ENST00000623007 NKTRP30414 1462 aaKnown RBP21.42■■□□□ 1.02
LDB3-208ENST00000623007 NEFMP07197 916 aa21.41■■□□□ 1.02
LDB3-208ENST00000623007 USP6P35125 1406 aa21.41■■□□□ 1.02
LDB3-208ENST00000623007 PHF23Q9BUL5 403 aaPredicted RBP21.4■■□□□ 1.02
LDB3-208ENST00000623007 TCP11L2Q8N4U5 519 aa21.39■■□□□ 1.01
LDB3-208ENST00000623007 FCHSD2O94868 740 aa21.38■■□□□ 1.01
LDB3-208ENST00000623007 IRX6P78412 446 aaPredicted RBP21.38■■□□□ 1.01
LDB3-208ENST00000623007 WWC1Q8IX03 1113 aa21.38■■□□□ 1.01
LDB3-208ENST00000623007 ACEP12821 1306 aa21.38■■□□□ 1.01
LDB3-208ENST00000623007 MAPK8IP3Q9UPT6 1336 aa21.38■■□□□ 1.01
LDB3-208ENST00000623007 MAP2P11137 1827 aaKnown RBP21.37■■□□□ 1.01
LDB3-208ENST00000623007 NPHP4O75161 1426 aaPredicted RBP21.37■■□□□ 1.01
LDB3-208ENST00000623007 POLKQ9UBT6 870 aa21.37■■□□□ 1.01
LDB3-208ENST00000623007 TTC21BQ7Z4L5 1316 aa21.37■■□□□ 1.01
LDB3-208ENST00000623007 FMN2Q9NZ56 1722 aa21.36■■□□□ 1.01
LDB3-208ENST00000623007 SENP3-EIF4A1A0A087X0R7 540 aa21.35■■□□□ 1.01
LDB3-208ENST00000623007 KCNA6P17658 529 aa21.35■■□□□ 1.01
LDB3-208ENST00000623007 LRRC7Q96NW7 1537 aa21.35■■□□□ 1.01
LDB3-208ENST00000623007 SSH2Q76I76 1423 aa21.34■■□□□ 1.01
LDB3-208ENST00000623007 U2SURPO15042 1029 aaKnown RBP21.34■■□□□ 1.01
LDB3-208ENST00000623007 NME9Q86XW9 330 aa21.34■■□□□ 1.01
LDB3-208ENST00000623007 MYH16Q9H6N6 1097 aa21.34■■□□□ 1.01
LDB3-208ENST00000623007 OVOS2A0A0J9YW53 1432 aa21.33■■□□□ 1.01
LDB3-208ENST00000623007 OVOS2Q6IE36 1432 aa21.33■■□□□ 1.01
LDB3-208ENST00000623007 NALCNQ8IZF0 1738 aa21.33■■□□□ 1
LDB3-208ENST00000623007 CT47B1P0C2W7 299 aaPredicted RBP21.32■■□□□ 1
LDB3-208ENST00000623007 PLEKHF1Q96S99 279 aa21.32■■□□□ 1
LDB3-208ENST00000623007 USP31Q70CQ4 1352 aa21.32■■□□□ 1
LDB3-208ENST00000623007 IL16Q14005 1332 aa21.31■■□□□ 1
LDB3-208ENST00000623007 NWD1Q149M9 1564 aa21.31■■□□□ 1
LDB3-208ENST00000623007 NGDNQ8NEJ9 315 aaKnown RBP21.3■■□□□ 1
LDB3-208ENST00000623007 CCDC136Q96JN2 1154 aa21.3■■□□□ 1
LDB3-208ENST00000623007 ADGRL3Q9HAR2 1447 aa21.3■■□□□ 1
LDB3-208ENST00000623007 CALD1Q05682 793 aaKnown RBP21.28■■□□□ 1
LDB3-208ENST00000623007 USP54Q70EL1 1684 aa21.28■■□□□ 1
LDB3-208ENST00000623007 KIF24Q5T7B8 1368 aa21.28■■□□□ 1
LDB3-208ENST00000623007 TMPOP42166 694 aaKnown RBP21.28■■□□□ 1
LDB3-208ENST00000623007 NCKAP5LQ9HCH0 1330 aa21.27■■□□□ 1
LDB3-208ENST00000623007 PPM1GO15355 546 aaPredicted RBP21.24■□□□□ 0.99
LDB3-208ENST00000623007 IL13P35225 146 aa21.24■□□□□ 0.99
LDB3-208ENST00000623007 LMOD3Q0VAK6 560 aa21.24■□□□□ 0.99
LDB3-208ENST00000623007 RGPD8O14715 1765 aaPredicted RBP21.23■□□□□ 0.99
LDB3-208ENST00000623007 RSPH6AQ9H0K4 717 aa21.23■□□□□ 0.99
LDB3-208ENST00000623007 AAMPQ13685 434 aa21.22■□□□□ 0.99
LDB3-208ENST00000623007 NEUROD2Q15784 382 aa21.22■□□□□ 0.99
LDB3-208ENST00000623007 EMILIN1Q9Y6C2 1016 aa21.22■□□□□ 0.99
LDB3-208ENST00000623007 NCOA3Q9Y6Q9 1424 aa21.22■□□□□ 0.99
LDB3-208ENST00000623007 B4GALNT3Q6L9W6 998 aa21.21■□□□□ 0.99
LDB3-208ENST00000623007 NUTM2FA1L443 756 aa21.2■□□□□ 0.98
LDB3-208ENST00000623007 SPINK5Q9NQ38 1064 aaPredicted RBP21.2■□□□□ 0.98
LDB3-208ENST00000623007 RRP7AQ9Y3A4 280 aaKnown RBP21.2■□□□□ 0.98
LDB3-208ENST00000623007 RIPK4P57078 832 aa21.19■□□□□ 0.98
LDB3-208ENST00000623007 PDE3AQ14432 1141 aa21.19■□□□□ 0.98
LDB3-208ENST00000623007 PMFBP1Q8TBY8 1022 aa21.19■□□□□ 0.98
LDB3-208ENST00000623007 PHF8Q9UPP1 1060 aa21.19■□□□□ 0.98
LDB3-208ENST00000623007 SBNO1A3KN83 1393 aa21.19■□□□□ 0.98
LDB3-208ENST00000623007 PRKAR2BP31323 418 aa21.18■□□□□ 0.98
LDB3-208ENST00000623007 FLT4P35916 1363 aa21.18■□□□□ 0.98
LDB3-208ENST00000623007 NFE2L2Q16236 605 aa21.18■□□□□ 0.98
LDB3-208ENST00000623007 ZNF428Q96B54 188 aa21.18■□□□□ 0.98
LDB3-208ENST00000623007 MS4A1P11836 297 aa21.17■□□□□ 0.98
LDB3-208ENST00000623007 ZRANB1Q9UGI0 708 aa21.17■□□□□ 0.98
LDB3-208ENST00000623007 PIK3C2AO00443 1686 aa21.17■□□□□ 0.98
LDB3-208ENST00000623007 EXOC6Q8TAG9 804 aa21.16■□□□□ 0.98
LDB3-208ENST00000623007 RRS1Q15050 365 aaKnown RBP21.15■□□□□ 0.98
LDB3-208ENST00000623007 TRIM35Q9UPQ4 493 aa21.15■□□□□ 0.98
LDB3-208ENST00000623007 DCCP43146 1447 aa21.14■□□□□ 0.97
LDB3-208ENST00000623007 ARHGEF10O15013 1369 aa21.14■□□□□ 0.97
LDB3-208ENST00000623007 DMRT2Q9Y5R5 561 aa21.14■□□□□ 0.97
LDB3-208ENST00000623007 KIF1AQ12756 1690 aa21.14■□□□□ 0.97
LDB3-208ENST00000623007 RTL1A6NKG5 1358 aa21.13■□□□□ 0.97
LDB3-208ENST00000623007 C14orf37Q86TY3 774 aa21.13■□□□□ 0.97
LDB3-208ENST00000623007 TSHZ2Q9NRE2 1034 aa21.13■□□□□ 0.97
LDB3-208ENST00000623007 NLRP6P59044 892 aa21.12■□□□□ 0.97
LDB3-208ENST00000623007 RGPD1P0DJD0 1748 aa21.12■□□□□ 0.97
LDB3-208ENST00000623007 CANXP27824 592 aaKnown RBP21.11■□□□□ 0.97
LDB3-208ENST00000623007 RARSP54136 660 aaKnown RBP21.11■□□□□ 0.97
LDB3-208ENST00000623007 EIF4A2Q14240 407 aaKnown RBP21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms