RNA–Protein interactions for RNA: ENST00000621396.4

CBWD3-216, Transcript of COBW domain containing 3, humanhuman

TSL 2

Gene CBWD3, Length 2,437 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-216ENST00000621396 ATF3P18847 181 aa21.4■■□□□ 1.02
CBWD3-216ENST00000621396 ANKARQ7Z5J8 1434 aa21.4■■□□□ 1.02
CBWD3-216ENST00000621396 PPM1GO15355 546 aaPredicted RBP21.39■■□□□ 1.01
CBWD3-216ENST00000621396 PLEKHG5O94827 1062 aa21.39■■□□□ 1.01
CBWD3-216ENST00000621396 DDX17Q92841 729 aaKnown RBP21.39■■□□□ 1.01
CBWD3-216ENST00000621396 NSD2O96028 1365 aa21.38■■□□□ 1.01
CBWD3-216ENST00000621396 POLR3AO14802 1390 aaPredicted RBP21.38■■□□□ 1.01
CBWD3-216ENST00000621396 ITSN1Q15811 1721 aa21.38■■□□□ 1.01
CBWD3-216ENST00000621396 CENPBP07199 599 aaPredicted RBP21.37■■□□□ 1.01
CBWD3-216ENST00000621396 AKAP12Q02952 1782 aa21.36■■□□□ 1.01
CBWD3-216ENST00000621396 ADAMTS8Q9UP79 889 aa21.36■■□□□ 1.01
CBWD3-216ENST00000621396 DMRT2Q9Y5R5 561 aa21.36■■□□□ 1.01
CBWD3-216ENST00000621396 MON2Q7Z3U7 1717 aa21.36■■□□□ 1.01
CBWD3-216ENST00000621396 COG3Q96JB2 828 aa21.36■■□□□ 1.01
CBWD3-216ENST00000621396 SALL2Q9Y467 1007 aaPredicted RBP21.36■■□□□ 1.01
CBWD3-216ENST00000621396 LRRC7Q96NW7 1537 aa21.35■■□□□ 1.01
CBWD3-216ENST00000621396 PSME1Q06323 249 aa21.35■■□□□ 1.01
CBWD3-216ENST00000621396 RRS1Q15050 365 aaKnown RBP21.35■■□□□ 1.01
CBWD3-216ENST00000621396 MSH6P52701 1360 aa21.33■■□□□ 1.01
CBWD3-216ENST00000621396 C1orf167Q5SNV9 1468 aa21.33■■□□□ 1
CBWD3-216ENST00000621396 EMILIN1Q9Y6C2 1016 aa21.33■■□□□ 1
CBWD3-216ENST00000621396 SSH2Q76I76 1423 aa21.32■■□□□ 1
CBWD3-216ENST00000621396 KIF20BQ96Q89 1820 aa21.32■■□□□ 1
CBWD3-216ENST00000621396 WDR43Q15061 677 aaKnown RBP eCLIP21.31■■□□□ 1
CBWD3-216ENST00000621396 CADPS2Q86UW7 1296 aa21.31■■□□□ 1
CBWD3-216ENST00000621396 ABTB2Q8N961 1025 aa21.31■■□□□ 1
CBWD3-216ENST00000621396 POLKQ9UBT6 870 aa21.31■■□□□ 1
CBWD3-216ENST00000621396 MST1RQ04912 1400 aa21.31■■□□□ 1
CBWD3-216ENST00000621396 XIRP1Q702N8 1843 aaKnown RBP21.3■■□□□ 1
CBWD3-216ENST00000621396 NLRP6P59044 892 aa21.3■■□□□ 1
CBWD3-216ENST00000621396 LMOD2Q6P5Q4 547 aa21.3■■□□□ 1
CBWD3-216ENST00000621396 NRKQ7Z2Y5 1582 aa21.3■■□□□ 1
CBWD3-216ENST00000621396 CCDC146Q8IYE0 955 aa21.29■■□□□ 1
CBWD3-216ENST00000621396 AEBP2Q6ZN18 517 aaPredicted RBP21.27■■□□□ 1
CBWD3-216ENST00000621396 TTC21AQ8NDW8 1320 aa21.26■□□□□ 0.99
CBWD3-216ENST00000621396 NCOA3Q9Y6Q9 1424 aa21.26■□□□□ 0.99
CBWD3-216ENST00000621396 ANKRD26Q9UPS8 1709 aa21.26■□□□□ 0.99
CBWD3-216ENST00000621396 KRT28Q7Z3Y7 464 aa21.25■□□□□ 0.99
CBWD3-216ENST00000621396 CFAP53Q96M91 514 aa21.25■□□□□ 0.99
CBWD3-216ENST00000621396 SLAIN2Q9P270 581 aa21.25■□□□□ 0.99
CBWD3-216ENST00000621396 OVOS2A0A0J9YW53 1432 aa21.24■□□□□ 0.99
CBWD3-216ENST00000621396 OVOS2Q6IE36 1432 aa21.24■□□□□ 0.99
CBWD3-216ENST00000621396 U2SURPO15042 1029 aaKnown RBP21.24■□□□□ 0.99
CBWD3-216ENST00000621396 DCCP43146 1447 aa21.23■□□□□ 0.99
CBWD3-216ENST00000621396 BRINP3Q76B58 766 aa21.23■□□□□ 0.99
CBWD3-216ENST00000621396 PIK3C2AO00443 1686 aa21.22■□□□□ 0.99
CBWD3-216ENST00000621396 U2AF1L5P0DN76 240 aaPredicted RBP21.21■□□□□ 0.99
CBWD3-216ENST00000621396 U2AF1Q01081 240 aaKnown RBP eCLIP21.21■□□□□ 0.99
CBWD3-216ENST00000621396 MAP2P11137 1827 aaKnown RBP21.21■□□□□ 0.99
CBWD3-216ENST00000621396 SCAF1Q9H7N4 1312 aaKnown RBP21.19■□□□□ 0.98
CBWD3-216ENST00000621396 ZBTB7CA1YPR0 619 aa21.18■□□□□ 0.98
CBWD3-216ENST00000621396 DIAPH1O60610 1272 aaKnown RBP21.18■□□□□ 0.98
CBWD3-216ENST00000621396 HSP90AB2PQ58FF8 381 aa21.18■□□□□ 0.98
CBWD3-216ENST00000621396 MAP3K19Q56UN5 1328 aa21.17■□□□□ 0.98
CBWD3-216ENST00000621396 ZBED9Q6R2W3 1325 aa21.17■□□□□ 0.98
CBWD3-216ENST00000621396 AATKQ6ZMQ8 1374 aa21.17■□□□□ 0.98
CBWD3-216ENST00000621396 SHPRHQ149N8 1683 aa21.16■□□□□ 0.98
CBWD3-216ENST00000621396 USP31Q70CQ4 1352 aa21.16■□□□□ 0.98
CBWD3-216ENST00000621396 PNPLA6Q8IY17 1366 aa21.16■□□□□ 0.98
CBWD3-216ENST00000621396 APAF1O14727 1248 aa21.16■□□□□ 0.98
CBWD3-216ENST00000621396 COL3A1P02461 1466 aaPredicted RBP21.15■□□□□ 0.98
CBWD3-216ENST00000621396 NEUROD2Q15784 382 aa21.15■□□□□ 0.98
CBWD3-216ENST00000621396 BLMP54132 1417 aaPredicted RBP21.15■□□□□ 0.98
CBWD3-216ENST00000621396 CABLES1Q8TDN4 633 aa21.14■□□□□ 0.97
CBWD3-216ENST00000621396 RRP7AQ9Y3A4 280 aaKnown RBP21.14■□□□□ 0.97
CBWD3-216ENST00000621396 NPHP3Q7Z494 1330 aa21.14■□□□□ 0.97
CBWD3-216ENST00000621396 HMOX1P09601 288 aa21.14■□□□□ 0.97
CBWD3-216ENST00000621396 NUDCQ9Y266 331 aa21.13■□□□□ 0.97
CBWD3-216ENST00000621396 LTBP4Q8N2S1 1624 aa21.12■□□□□ 0.97
CBWD3-216ENST00000621396 AMPHP49418 695 aa21.12■□□□□ 0.97
CBWD3-216ENST00000621396 IL13P35225 146 aa21.11■□□□□ 0.97
CBWD3-216ENST00000621396 MARF1Q9Y4F3 1742 aaKnown RBP21.11■□□□□ 0.97
CBWD3-216ENST00000621396 KIF1AQ12756 1690 aa21.1■□□□□ 0.97
CBWD3-216ENST00000621396 GCP02774 474 aa21.1■□□□□ 0.97
CBWD3-216ENST00000621396 EIF4A2Q14240 407 aaKnown RBP21.09■□□□□ 0.97
CBWD3-216ENST00000621396 LTV1Q96GA3 475 aaPredicted RBP21.09■□□□□ 0.97
CBWD3-216ENST00000621396 CDCA7LQ96GN5 454 aa21.09■□□□□ 0.97
CBWD3-216ENST00000621396 PEAK1Q9H792 1746 aa21.09■□□□□ 0.97
CBWD3-216ENST00000621396 SMG6Q86US8 1419 aaKnown RBP21.08■□□□□ 0.97
CBWD3-216ENST00000621396 ZC3H6P61129 1189 aaKnown RBP21.08■□□□□ 0.97
CBWD3-216ENST00000621396 CDK12Q9NYV4 1490 aaPredicted RBP21.08■□□□□ 0.96
CBWD3-216ENST00000621396 TRPM3Q9HCF6 1732 aaPredicted RBP21.07■□□□□ 0.96
CBWD3-216ENST00000621396 TCP11L2Q8N4U5 519 aa21.07■□□□□ 0.96
CBWD3-216ENST00000621396 AEBP1Q8IUX7 1158 aa21.06■□□□□ 0.96
CBWD3-216ENST00000621396 RUNDC1Q96C34 613 aa21.06■□□□□ 0.96
CBWD3-216ENST00000621396 INSRP06213 1382 aa21.06■□□□□ 0.96
CBWD3-216ENST00000621396 PXDNQ92626 1479 aa21.06■□□□□ 0.96
CBWD3-216ENST00000621396 HOXC9P31274 260 aa21.06■□□□□ 0.96
CBWD3-216ENST00000621396 PIP4K2BP78356 416 aa21.05■□□□□ 0.96
CBWD3-216ENST00000621396 SPATA31A3Q5VYP0 1347 aa21.05■□□□□ 0.96
CBWD3-216ENST00000621396 PLEKHF1Q96S99 279 aa21.05■□□□□ 0.96
CBWD3-216ENST00000621396 PRKAR2BP31323 418 aa21.04■□□□□ 0.96
CBWD3-216ENST00000621396 SBNO1A3KN83 1393 aa21.04■□□□□ 0.96
CBWD3-216ENST00000621396 FLT4P35916 1363 aa21.04■□□□□ 0.96
CBWD3-216ENST00000621396 KCNH5Q8NCM2 988 aa21.03■□□□□ 0.96
CBWD3-216ENST00000621396 PHACTR3Q96KR7 559 aa21.03■□□□□ 0.96
CBWD3-216ENST00000621396 SULT6B1Q6IMI4 303 aa21.03■□□□□ 0.96
CBWD3-216ENST00000621396 SOS2Q07890 1332 aaPredicted RBP21.02■□□□□ 0.96
CBWD3-216ENST00000621396 RSPH6AQ9H0K4 717 aa21.02■□□□□ 0.96
CBWD3-216ENST00000621396 TNS3Q68CZ2 1445 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms