RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 DCCP43146 1447 aa10.96□□□□□ -0.65
CPNE3-209ENST00000620393 MIER1Q8N108 512 aa10.96□□□□□ -0.65
CPNE3-209ENST00000620393 ORAI2Q96SN7 254 aa10.96□□□□□ -0.65
CPNE3-209ENST00000620393 SLAIN2Q9P270 581 aa10.96□□□□□ -0.65
CPNE3-209ENST00000620393 STRCP1A6NGW2 1772 aa10.95□□□□□ -0.66
CPNE3-209ENST00000620393 CPSF1Q10570 1443 aaKnown RBP10.95□□□□□ -0.66
CPNE3-209ENST00000620393 A0A1W2PP64 1363 aa10.95□□□□□ -0.66
CPNE3-209ENST00000620393 PRKRIP1Q9H875 184 aaPredicted RBP10.95□□□□□ -0.66
CPNE3-209ENST00000620393 CD163L1Q9NR16 1453 aa10.94□□□□□ -0.66
CPNE3-209ENST00000620393 POLR3AO14802 1390 aaPredicted RBP10.94□□□□□ -0.66
CPNE3-209ENST00000620393 NPC1L1Q9UHC9 1359 aa10.94□□□□□ -0.66
CPNE3-209ENST00000620393 CGNL1Q0VF96 1302 aa10.94□□□□□ -0.66
CPNE3-209ENST00000620393 RALBP1Q15311 655 aa10.94□□□□□ -0.66
CPNE3-209ENST00000620393 LTBP4Q8N2S1 1624 aa10.94□□□□□ -0.66
CPNE3-209ENST00000620393 CDC42BPGQ6DT37 1551 aa10.94□□□□□ -0.66
CPNE3-209ENST00000620393 C1orf167Q5SNV9 1468 aa10.93□□□□□ -0.66
CPNE3-209ENST00000620393 KTN1Q86UP2 1357 aaKnown RBP10.93□□□□□ -0.66
CPNE3-209ENST00000620393 FYB1O15117 783 aa10.93□□□□□ -0.66
CPNE3-209ENST00000620393 PSME1Q06323 249 aa10.93□□□□□ -0.66
CPNE3-209ENST00000620393 CC2D1BQ5T0F9 858 aaKnown RBP10.93□□□□□ -0.66
CPNE3-209ENST00000620393 MST1RQ04912 1400 aa10.92□□□□□ -0.66
CPNE3-209ENST00000620393 NSD3Q9BZ95 1437 aa10.92□□□□□ -0.66
CPNE3-209ENST00000620393 TTC21BQ7Z4L5 1316 aa10.92□□□□□ -0.66
CPNE3-209ENST00000620393 FOXO3O43524 673 aa10.92□□□□□ -0.66
CPNE3-209ENST00000620393 CNGB1Q14028 1251 aaPredicted RBP10.92□□□□□ -0.66
CPNE3-209ENST00000620393 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.92□□□□□ -0.66
CPNE3-209ENST00000620393 NALCNQ8IZF0 1738 aa10.9□□□□□ -0.66
CPNE3-209ENST00000620393 BRINP3Q76B58 766 aa10.9□□□□□ -0.66
CPNE3-209ENST00000620393 KRT28Q7Z3Y7 464 aa10.9□□□□□ -0.66
CPNE3-209ENST00000620393 MORC1Q86VD1 984 aa10.9□□□□□ -0.66
CPNE3-209ENST00000620393 EDC4Q6P2E9 1401 aaKnown RBP10.9□□□□□ -0.66
CPNE3-209ENST00000620393 SSH2Q76I76 1423 aa10.9□□□□□ -0.66
CPNE3-209ENST00000620393 BRD4O60885 1362 aaPredicted RBP10.9□□□□□ -0.67
CPNE3-209ENST00000620393 TTC21AQ8NDW8 1320 aa10.89□□□□□ -0.67
CPNE3-209ENST00000620393 CCER2I3L3R5 266 aa10.89□□□□□ -0.67
CPNE3-209ENST00000620393 TOM1O60784 492 aa10.89□□□□□ -0.67
CPNE3-209ENST00000620393 NME9Q86XW9 330 aa10.89□□□□□ -0.67
CPNE3-209ENST00000620393 CERKQ8TCT0 537 aa10.89□□□□□ -0.67
CPNE3-209ENST00000620393 GGNBP2Q9H3C7 697 aa10.89□□□□□ -0.67
CPNE3-209ENST00000620393 USP6P35125 1406 aa10.89□□□□□ -0.67
CPNE3-209ENST00000620393 FMN2Q9NZ56 1722 aa10.89□□□□□ -0.67
CPNE3-209ENST00000620393 NSD2O96028 1365 aa10.89□□□□□ -0.67
CPNE3-209ENST00000620393 USP32Q8NFA0 1604 aa10.88□□□□□ -0.67
CPNE3-209ENST00000620393 MYOM1P52179 1685 aa10.88□□□□□ -0.67
CPNE3-209ENST00000620393 PARD3Q8TEW0 1356 aa10.88□□□□□ -0.67
CPNE3-209ENST00000620393 NPHP3Q7Z494 1330 aa10.87□□□□□ -0.67
CPNE3-209ENST00000620393 PAK3O75914 559 aaPredicted RBP10.87□□□□□ -0.67
CPNE3-209ENST00000620393 ABTB2Q8N961 1025 aa10.87□□□□□ -0.67
CPNE3-209ENST00000620393 COG3Q96JB2 828 aa10.87□□□□□ -0.67
CPNE3-209ENST00000620393 PLSCR2Q9NRY7 297 aa10.87□□□□□ -0.67
CPNE3-209ENST00000620393 ZRANB1Q9UGI0 708 aa10.87□□□□□ -0.67
CPNE3-209ENST00000620393 MYBBP1AQ9BQG0 1328 aaKnown RBP10.86□□□□□ -0.67
CPNE3-209ENST00000620393 PPP2R1AP30153 589 aa10.86□□□□□ -0.67
CPNE3-209ENST00000620393 XPCQ01831 940 aaPredicted RBP10.86□□□□□ -0.67
CPNE3-209ENST00000620393 DDX17Q92841 729 aaKnown RBP10.86□□□□□ -0.67
CPNE3-209ENST00000620393 UBAP1LF5GYI3 381 aa10.85□□□□□ -0.67
CPNE3-209ENST00000620393 NLRP6P59044 892 aa10.85□□□□□ -0.67
CPNE3-209ENST00000620393 NLRP13Q86W25 1043 aa10.85□□□□□ -0.67
CPNE3-209ENST00000620393 USP31Q70CQ4 1352 aa10.85□□□□□ -0.67
CPNE3-209ENST00000620393 SOS2Q07890 1332 aaPredicted RBP10.84□□□□□ -0.67
CPNE3-209ENST00000620393 PITPNM1O00562 1244 aa10.84□□□□□ -0.67
CPNE3-209ENST00000620393 TNNT2P45379 298 aaPredicted RBP10.84□□□□□ -0.67
CPNE3-209ENST00000620393 SBNO1A3KN83 1393 aa10.84□□□□□ -0.67
CPNE3-209ENST00000620393 XIRP1Q702N8 1843 aaKnown RBP10.84□□□□□ -0.67
CPNE3-209ENST00000620393 TOPAZ1Q8N9V7 1692 aa10.83□□□□□ -0.68
CPNE3-209ENST00000620393 CCDC184Q52MB2 194 aa10.83□□□□□ -0.68
CPNE3-209ENST00000620393 NUTM2GQ5VZR2 741 aa10.83□□□□□ -0.68
CPNE3-209ENST00000620393 SSUH2Q9Y2M2 353 aa10.83□□□□□ -0.68
CPNE3-209ENST00000620393 IQSEC2Q5JU85 1478 aa10.82□□□□□ -0.68
CPNE3-209ENST00000620393 MTHFSP49914 203 aa10.82□□□□□ -0.68
CPNE3-209ENST00000620393 LMOD2Q6P5Q4 547 aa10.82□□□□□ -0.68
CPNE3-209ENST00000620393 SPATA31A3Q5VYP0 1347 aa10.82□□□□□ -0.68
CPNE3-209ENST00000620393 FBLN1P23142 703 aa10.81□□□□□ -0.68
CPNE3-209ENST00000620393 PIP4K2BP78356 416 aa10.81□□□□□ -0.68
CPNE3-209ENST00000620393 MRS2Q9HD23 443 aa10.81□□□□□ -0.68
CPNE3-209ENST00000620393 POLKQ9UBT6 870 aa10.81□□□□□ -0.68
CPNE3-209ENST00000620393 RGPD8O14715 1765 aaPredicted RBP10.8□□□□□ -0.68
CPNE3-209ENST00000620393 AATKQ6ZMQ8 1374 aa10.8□□□□□ -0.68
CPNE3-209ENST00000620393 LRRC59Q96AG4 307 aaKnown RBP10.8□□□□□ -0.68
CPNE3-209ENST00000620393 ITSN1Q15811 1721 aa10.8□□□□□ -0.68
CPNE3-209ENST00000620393 GCP02774 474 aa10.79□□□□□ -0.68
CPNE3-209ENST00000620393 KCNH5Q8NCM2 988 aa10.79□□□□□ -0.68
CPNE3-209ENST00000620393 PNISRQ8TF01 805 aaKnown RBP10.79□□□□□ -0.68
CPNE3-209ENST00000620393 AKAP12Q02952 1782 aa10.78□□□□□ -0.68
CPNE3-209ENST00000620393 OVOS2A0A0J9YW53 1432 aa10.78□□□□□ -0.68
CPNE3-209ENST00000620393 OVOS2Q6IE36 1432 aa10.78□□□□□ -0.68
CPNE3-209ENST00000620393 SPDYE1Q8NFV5 336 aaPredicted RBP10.78□□□□□ -0.68
CPNE3-209ENST00000620393 PXDNQ92626 1479 aa10.78□□□□□ -0.68
CPNE3-209ENST00000620393 KIF1AQ12756 1690 aa10.78□□□□□ -0.68
CPNE3-209ENST00000620393 ARHGEF10O15013 1369 aa10.77□□□□□ -0.68
CPNE3-209ENST00000620393 SOX12O15370 315 aa10.77□□□□□ -0.69
CPNE3-209ENST00000620393 RRS1Q15050 365 aaKnown RBP10.77□□□□□ -0.69
CPNE3-209ENST00000620393 CFAP53Q96M91 514 aa10.77□□□□□ -0.69
CPNE3-209ENST00000620393 EMILIN1Q9Y6C2 1016 aa10.77□□□□□ -0.69
CPNE3-209ENST00000620393 MON2Q7Z3U7 1717 aa10.77□□□□□ -0.69
CPNE3-209ENST00000620393 USP19O94966 1318 aa10.77□□□□□ -0.69
CPNE3-209ENST00000620393 TNS3Q68CZ2 1445 aa10.76□□□□□ -0.69
CPNE3-209ENST00000620393 PPM1GO15355 546 aaPredicted RBP10.76□□□□□ -0.69
CPNE3-209ENST00000620393 PIP4P2Q8N4L2 257 aa10.76□□□□□ -0.69
CPNE3-209ENST00000620393 CLEC11AQ9Y240 323 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms