RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 NBPF8Q3BBV2 869 aa22.87■■□□□ 1.25
BRCA1-228ENST00000618469 A0A0G2JS52 829 aa22.86■■□□□ 1.25
BRCA1-228ENST00000618469 MYT1Q01538 1121 aa22.86■■□□□ 1.25
BRCA1-228ENST00000618469 PLCH1Q4KWH8 1693 aa22.86■■□□□ 1.25
BRCA1-228ENST00000618469 KRT27Q7Z3Y8 459 aa22.84■■□□□ 1.25
BRCA1-228ENST00000618469 PMFBP1Q8TBY8 1022 aa22.84■■□□□ 1.25
BRCA1-228ENST00000618469 GPRASP1Q5JY77 1395 aa22.84■■□□□ 1.25
BRCA1-228ENST00000618469 TNS3Q68CZ2 1445 aa22.83■■□□□ 1.25
BRCA1-228ENST00000618469 TRPM3Q9HCF6 1732 aaPredicted RBP22.83■■□□□ 1.25
BRCA1-228ENST00000618469 VPS72Q15906 364 aa22.83■■□□□ 1.25
BRCA1-228ENST00000618469 FAM182BQ5T319 152 aa22.81■■□□□ 1.24
BRCA1-228ENST00000618469 LRP5O75197 1615 aa22.8■■□□□ 1.24
BRCA1-228ENST00000618469 CDK19Q9BWU1 502 aa22.8■■□□□ 1.24
BRCA1-228ENST00000618469 ABCA3Q99758 1704 aa22.79■■□□□ 1.24
BRCA1-228ENST00000618469 FAM83GA6ND36 823 aa22.78■■□□□ 1.24
BRCA1-228ENST00000618469 PSME1Q06323 249 aa22.78■■□□□ 1.24
BRCA1-228ENST00000618469 FAM98CQ17RN3 349 aaKnown RBP22.78■■□□□ 1.24
BRCA1-228ENST00000618469 NUDT16Q96DE0 195 aaKnown RBP22.78■■□□□ 1.24
BRCA1-228ENST00000618469 SBNO1A3KN83 1393 aa22.77■■□□□ 1.24
BRCA1-228ENST00000618469 ALS2Q96Q42 1657 aa22.77■■□□□ 1.24
BRCA1-228ENST00000618469 NWD2Q9ULI1 1742 aa22.77■■□□□ 1.23
BRCA1-228ENST00000618469 BAG6P46379 1132 aa22.76■■□□□ 1.23
BRCA1-228ENST00000618469 EN1Q05925 392 aaPredicted RBP22.76■■□□□ 1.23
BRCA1-228ENST00000618469 CARD11Q9BXL7 1154 aa22.76■■□□□ 1.23
BRCA1-228ENST00000618469 ONECUT3O60422 494 aaPredicted RBP22.75■■□□□ 1.23
BRCA1-228ENST00000618469 SRPK2P78362 688 aaKnown RBP22.75■■□□□ 1.23
BRCA1-228ENST00000618469 NGDNQ8NEJ9 315 aaKnown RBP22.75■■□□□ 1.23
BRCA1-228ENST00000618469 CLSPNQ9HAW4 1339 aa22.75■■□□□ 1.23
BRCA1-228ENST00000618469 ARHGEF10O15013 1369 aa22.74■■□□□ 1.23
BRCA1-228ENST00000618469 PPIP5K1Q6PFW1 1433 aa22.73■■□□□ 1.23
BRCA1-228ENST00000618469 R3HDM1Q15032 1099 aaKnown RBP22.72■■□□□ 1.23
BRCA1-228ENST00000618469 CABP2Q9NPB3 220 aa22.72■■□□□ 1.23
BRCA1-228ENST00000618469 BTG4Q9NY30 223 aa22.72■■□□□ 1.23
BRCA1-228ENST00000618469 CCDC61Q9Y6R9 512 aa22.71■■□□□ 1.23
BRCA1-228ENST00000618469 NRAPQ86VF7 1730 aa22.71■■□□□ 1.23
BRCA1-228ENST00000618469 EVC2Q86UK5 1308 aa22.7■■□□□ 1.22
BRCA1-228ENST00000618469 POLR3AO14802 1390 aaPredicted RBP22.7■■□□□ 1.22
BRCA1-228ENST00000618469 CRYBG1Q9Y4K1 1723 aa22.68■■□□□ 1.22
BRCA1-228ENST00000618469 SBNO2Q9Y2G9 1366 aa22.68■■□□□ 1.22
BRCA1-228ENST00000618469 ACEP12821 1306 aa22.67■■□□□ 1.22
BRCA1-228ENST00000618469 CCER1Q8TC90 406 aaPredicted RBP22.67■■□□□ 1.22
BRCA1-228ENST00000618469 PAK3O75914 559 aaPredicted RBP22.66■■□□□ 1.22
BRCA1-228ENST00000618469 PLEKHG3A1L390 1219 aa22.65■■□□□ 1.22
BRCA1-228ENST00000618469 RGPD1P0DJD0 1748 aa22.65■■□□□ 1.22
BRCA1-228ENST00000618469 EZH2Q15910 746 aaKnown RBP22.64■■□□□ 1.21
BRCA1-228ENST00000618469 PHRF1Q9P1Y6 1649 aaKnown RBP22.64■■□□□ 1.21
BRCA1-228ENST00000618469 AKAP12Q02952 1782 aa22.61■■□□□ 1.21
BRCA1-228ENST00000618469 TIMELESSQ9UNS1 1208 aa22.61■■□□□ 1.21
BRCA1-228ENST00000618469 COL14A1Q05707 1796 aaKnown RBP22.61■■□□□ 1.21
BRCA1-228ENST00000618469 TNS1Q9HBL0 1735 aaKnown RBP22.6■■□□□ 1.21
BRCA1-228ENST00000618469 SPATA31A5Q5VU36 1347 aa22.59■■□□□ 1.21
BRCA1-228ENST00000618469 SPATA31A7Q8IWB4 1347 aa22.59■■□□□ 1.21
BRCA1-228ENST00000618469 CABP1Q9NZU7 370 aa22.59■■□□□ 1.21
BRCA1-228ENST00000618469 USP6P35125 1406 aa22.58■■□□□ 1.21
BRCA1-228ENST00000618469 TRIM37O94972 964 aa22.58■■□□□ 1.21
BRCA1-228ENST00000618469 USP47Q96K76 1375 aa22.58■■□□□ 1.21
BRCA1-228ENST00000618469 NRKQ7Z2Y5 1582 aa22.58■■□□□ 1.2
BRCA1-228ENST00000618469 CHRNA2Q15822 529 aa22.56■■□□□ 1.2
BRCA1-228ENST00000618469 MON2Q7Z3U7 1717 aa22.56■■□□□ 1.2
BRCA1-228ENST00000618469 THSD7AQ9UPZ6 1657 aa22.55■■□□□ 1.2
BRCA1-228ENST00000618469 NUTM2GQ5VZR2 741 aa22.55■■□□□ 1.2
BRCA1-228ENST00000618469 PRDM11Q9NQV5 511 aa22.55■■□□□ 1.2
BRCA1-228ENST00000618469 STRN4Q9NRL3 753 aa22.55■■□□□ 1.2
BRCA1-228ENST00000618469 PIK3C2AO00443 1686 aa22.55■■□□□ 1.2
BRCA1-228ENST00000618469 ST20-MTHFSA0A0A6YYL1 179 aa22.54■■□□□ 1.2
BRCA1-228ENST00000618469 USP35Q9P2H5 1018 aa22.54■■□□□ 1.2
BRCA1-228ENST00000618469 BRD4O60885 1362 aaPredicted RBP22.53■■□□□ 1.2
BRCA1-228ENST00000618469 CAMKK2Q96RR4 588 aa22.53■■□□□ 1.2
BRCA1-228ENST00000618469 APBA3O96018 575 aa22.52■■□□□ 1.2
BRCA1-228ENST00000618469 ABTB2Q8N961 1025 aa22.51■■□□□ 1.19
BRCA1-228ENST00000618469 TESK2Q96S53 571 aa22.51■■□□□ 1.19
BRCA1-228ENST00000618469 CPSF1Q10570 1443 aaKnown RBP22.49■■□□□ 1.19
BRCA1-228ENST00000618469 SSH2Q76I76 1423 aa22.49■■□□□ 1.19
BRCA1-228ENST00000618469 ZC3H6P61129 1189 aaKnown RBP22.49■■□□□ 1.19
BRCA1-228ENST00000618469 SPATA31A1Q5TZJ5 1347 aa22.49■■□□□ 1.19
BRCA1-228ENST00000618469 KIAA0232Q92628 1395 aa22.49■■□□□ 1.19
BRCA1-228ENST00000618469 DISP2A7MBM2 1401 aa22.48■■□□□ 1.19
BRCA1-228ENST00000618469 USP19O94966 1318 aa22.48■■□□□ 1.19
BRCA1-228ENST00000618469 KTN1Q86UP2 1357 aaKnown RBP22.48■■□□□ 1.19
BRCA1-228ENST00000618469 CD163L1Q9NR16 1453 aa22.47■■□□□ 1.19
BRCA1-228ENST00000618469 YY1P25490 414 aa22.47■■□□□ 1.19
BRCA1-228ENST00000618469 FAM196AQ6ZSG2 479 aa22.47■■□□□ 1.19
BRCA1-228ENST00000618469 TMC1Q8TDI8 760 aa22.47■■□□□ 1.19
BRCA1-228ENST00000618469 SLIT3O75094 1523 aa22.47■■□□□ 1.19
BRCA1-228ENST00000618469 NLRP13Q86W25 1043 aa22.45■■□□□ 1.18
BRCA1-228ENST00000618469 TTC21BQ7Z4L5 1316 aa22.44■■□□□ 1.18
BRCA1-228ENST00000618469 ZNF692Q9BU19 519 aaPredicted RBP22.44■■□□□ 1.18
BRCA1-228ENST00000618469 NUP188Q5SRE5 1749 aa22.43■■□□□ 1.18
BRCA1-228ENST00000618469 A0A1W2PP64 1363 aa22.42■■□□□ 1.18
BRCA1-228ENST00000618469 NINLQ9Y2I6 1382 aa22.42■■□□□ 1.18
BRCA1-228ENST00000618469 TTC21AQ8NDW8 1320 aa22.42■■□□□ 1.18
BRCA1-228ENST00000618469 SLC24A1O60721 1099 aa22.42■■□□□ 1.18
BRCA1-228ENST00000618469 EVA1CP58658 441 aa22.42■■□□□ 1.18
BRCA1-228ENST00000618469 NLRP6P59044 892 aa22.42■■□□□ 1.18
BRCA1-228ENST00000618469 TMF1P82094 1093 aa22.42■■□□□ 1.18
BRCA1-228ENST00000618469 PUS7Q96PZ0 661 aaKnown RBP22.42■■□□□ 1.18
BRCA1-228ENST00000618469 LMO7Q8WWI1 1683 aa22.42■■□□□ 1.18
BRCA1-228ENST00000618469 PDE3BQ13370 1112 aa22.41■■□□□ 1.18
BRCA1-228ENST00000618469 HDGFL2Q7Z4V5 671 aaPredicted RBP22.41■■□□□ 1.18
BRCA1-228ENST00000618469 SLC12A5Q9H2X9 1139 aa22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms