RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 ACEP12821 1306 aa17.24■□□□□ 0.35
CIITA-213ENST00000618327 SPRYD3Q8NCJ5 442 aa17.24■□□□□ 0.35
CIITA-213ENST00000618327 ZNF530Q6P9A1 599 aaPredicted RBP17.24■□□□□ 0.35
CIITA-213ENST00000618327 PUS7Q96PZ0 661 aaKnown RBP17.24■□□□□ 0.35
CIITA-213ENST00000618327 CCDC30Q5VVM6 783 aa17.23■□□□□ 0.35
CIITA-213ENST00000618327 ZC3H6P61129 1189 aaKnown RBP17.23■□□□□ 0.35
CIITA-213ENST00000618327 STRN4Q9NRL3 753 aa17.23■□□□□ 0.35
CIITA-213ENST00000618327 PRDM11Q9NQV5 511 aa17.23■□□□□ 0.35
CIITA-213ENST00000618327 NAP1L2Q9ULW6 460 aaPredicted RBP17.23■□□□□ 0.35
CIITA-213ENST00000618327 ZFYVE16Q7Z3T8 1539 aa17.23■□□□□ 0.35
CIITA-213ENST00000618327 NPATQ14207 1427 aa17.22■□□□□ 0.35
CIITA-213ENST00000618327 ASXL1Q8IXJ9 1541 aa17.22■□□□□ 0.35
CIITA-213ENST00000618327 CDK11BP21127 795 aaKnown RBP17.21■□□□□ 0.35
CIITA-213ENST00000618327 GTF2E1P29083 439 aaPredicted RBP17.21■□□□□ 0.35
CIITA-213ENST00000618327 FYB1O15117 783 aa17.21■□□□□ 0.35
CIITA-213ENST00000618327 TOM1L2Q6ZVM7 507 aa17.2■□□□□ 0.34
CIITA-213ENST00000618327 NOB1Q9ULX3 412 aaKnown RBP17.2■□□□□ 0.34
CIITA-213ENST00000618327 MEX3CQ5U5Q3 659 aaKnown RBP17.2■□□□□ 0.34
CIITA-213ENST00000618327 MLH3Q9UHC1 1453 aa17.2■□□□□ 0.34
CIITA-213ENST00000618327 YTHDC2Q9H6S0 1430 aaKnown RBP17.19■□□□□ 0.34
CIITA-213ENST00000618327 AIMP1Q12904 312 aaKnown RBP17.19■□□□□ 0.34
CIITA-213ENST00000618327 IPO9Q96P70 1041 aaKnown RBP17.19■□□□□ 0.34
CIITA-213ENST00000618327 PARD3Q8TEW0 1356 aa17.19■□□□□ 0.34
CIITA-213ENST00000618327 RIC3Q7Z5B4 369 aa17.18■□□□□ 0.34
CIITA-213ENST00000618327 CFAP65Q6ZU64 1925 aaKnown RBP17.18■□□□□ 0.34
CIITA-213ENST00000618327 ADCY10Q96PN6 1610 aa17.18■□□□□ 0.34
CIITA-213ENST00000618327 SLC4A2P04920 1241 aa17.17■□□□□ 0.34
CIITA-213ENST00000618327 SPG7Q9UQ90 795 aa17.17■□□□□ 0.34
CIITA-213ENST00000618327 PPIP5K1Q6PFW1 1433 aa17.17■□□□□ 0.34
CIITA-213ENST00000618327 TPRNQ4KMQ1 711 aa17.17■□□□□ 0.34
CIITA-213ENST00000618327 CDC42BPAQ5VT25 1732 aa17.17■□□□□ 0.34
CIITA-213ENST00000618327 COL17A1Q9UMD9 1497 aaPredicted RBP17.17■□□□□ 0.34
CIITA-213ENST00000618327 THUMPD2Q9BTF0 503 aaKnown RBP17.17■□□□□ 0.34
CIITA-213ENST00000618327 HDGFL1Q5TGJ6 251 aa17.17■□□□□ 0.34
CIITA-213ENST00000618327 ZRSR1Q15695 479 aaKnown RBP17.16■□□□□ 0.34
CIITA-213ENST00000618327 ATF7IPQ6VMQ6 1270 aa17.16■□□□□ 0.34
CIITA-213ENST00000618327 RILPL2Q969X0 211 aa17.16■□□□□ 0.34
CIITA-213ENST00000618327 ZNF428Q96B54 188 aa17.16■□□□□ 0.34
CIITA-213ENST00000618327 LNPKQ9C0E8 428 aa17.16■□□□□ 0.34
CIITA-213ENST00000618327 ABCC11Q96J66 1382 aa17.16■□□□□ 0.34
CIITA-213ENST00000618327 TAOK2Q9UL54 1235 aa17.15■□□□□ 0.34
CIITA-213ENST00000618327 TBX22Q9Y458 520 aa17.15■□□□□ 0.34
CIITA-213ENST00000618327 PER1O15534 1290 aaPredicted RBP17.15■□□□□ 0.34
CIITA-213ENST00000618327 UBTFL1P0CB47 393 aaPredicted RBP17.15■□□□□ 0.34
CIITA-213ENST00000618327 CARD14Q9BXL6 1004 aa17.15■□□□□ 0.34
CIITA-213ENST00000618327 SLKQ9H2G2 1235 aaPredicted RBP17.15■□□□□ 0.34
CIITA-213ENST00000618327 TTC21BQ7Z4L5 1316 aa17.15■□□□□ 0.34
CIITA-213ENST00000618327 GNAT3A8MTJ3 354 aa17.15■□□□□ 0.34
CIITA-213ENST00000618327 FBLN1P23142 703 aa17.15■□□□□ 0.34
CIITA-213ENST00000618327 KRT28Q7Z3Y7 464 aa17.14■□□□□ 0.33
CIITA-213ENST00000618327 LRPPRCP42704 1394 aaKnown RBP17.14■□□□□ 0.33
CIITA-213ENST00000618327 GNAI3P08754 354 aa17.14■□□□□ 0.33
CIITA-213ENST00000618327 CADPS2Q86UW7 1296 aa17.13■□□□□ 0.33
CIITA-213ENST00000618327 MCM10Q7L590 875 aa17.13■□□□□ 0.33
CIITA-213ENST00000618327 CLASP1Q7Z460 1538 aa17.13■□□□□ 0.33
CIITA-213ENST00000618327 DCTN1Q14203 1278 aa17.13■□□□□ 0.33
CIITA-213ENST00000618327 KDM5DQ9BY66 1539 aa17.13■□□□□ 0.33
CIITA-213ENST00000618327 TTC21AQ8NDW8 1320 aa17.12■□□□□ 0.33
CIITA-213ENST00000618327 CABP4P57796 275 aa17.12■□□□□ 0.33
CIITA-213ENST00000618327 DDX54Q8TDD1 881 aaKnown RBP17.12■□□□□ 0.33
CIITA-213ENST00000618327 PLCB2Q00722 1185 aa17.12■□□□□ 0.33
CIITA-213ENST00000618327 G3BP1Q13283 466 aaKnown RBP eCLIP17.11■□□□□ 0.33
CIITA-213ENST00000618327 MAGI2Q86UL8 1455 aa17.11■□□□□ 0.33
CIITA-213ENST00000618327 ARAP3Q8WWN8 1544 aa17.11■□□□□ 0.33
CIITA-213ENST00000618327 HSP90AB4PQ58FF6 505 aa17.11■□□□□ 0.33
CIITA-213ENST00000618327 IFT57Q9NWB7 429 aa17.11■□□□□ 0.33
CIITA-213ENST00000618327 KCNA6P17658 529 aa17.11■□□□□ 0.33
CIITA-213ENST00000618327 USHBP1Q8N6Y0 703 aa17.11■□□□□ 0.33
CIITA-213ENST00000618327 MVPQ14764 893 aaKnown RBP17.11■□□□□ 0.33
CIITA-213ENST00000618327 NUTM2BA6NNL0 878 aaPredicted RBP17.1■□□□□ 0.33
CIITA-213ENST00000618327 NUTM2EB1AL46 878 aaPredicted RBP17.1■□□□□ 0.33
CIITA-213ENST00000618327 NUTM2AQ8IVF1 878 aaPredicted RBP17.1■□□□□ 0.33
CIITA-213ENST00000618327 IFIT2P09913 472 aaKnown RBP17.1■□□□□ 0.33
CIITA-213ENST00000618327 TMX4Q9H1E5 349 aaPredicted RBP17.1■□□□□ 0.33
CIITA-213ENST00000618327 DMRT2Q9Y5R5 561 aa17.1■□□□□ 0.33
CIITA-213ENST00000618327 A0A1W2PP64 1363 aa17.1■□□□□ 0.33
CIITA-213ENST00000618327 HECW2Q9P2P5 1572 aa17.09■□□□□ 0.33
CIITA-213ENST00000618327 BTBD11A6QL63 1104 aa17.09■□□□□ 0.33
CIITA-213ENST00000618327 DUSP27Q5VZP5 1158 aa17.09■□□□□ 0.33
CIITA-213ENST00000618327 NKTRP30414 1462 aaKnown RBP17.09■□□□□ 0.33
CIITA-213ENST00000618327 C1orf115Q9H7X2 142 aa17.09■□□□□ 0.33
CIITA-213ENST00000618327 MIS18AQ9NYP9 233 aa17.09■□□□□ 0.33
CIITA-213ENST00000618327 RARSP54136 660 aaKnown RBP17.08■□□□□ 0.33
CIITA-213ENST00000618327 PIP4K2BP78356 416 aa17.08■□□□□ 0.32
CIITA-213ENST00000618327 L1TD1Q5T7N2 865 aaKnown RBP17.08■□□□□ 0.32
CIITA-213ENST00000618327 FANCIQ9NVI1 1328 aa17.08■□□□□ 0.32
CIITA-213ENST00000618327 POLR3AO14802 1390 aaPredicted RBP17.08■□□□□ 0.32
CIITA-213ENST00000618327 CCT4P50991 539 aaKnown RBP17.07■□□□□ 0.32
CIITA-213ENST00000618327 TMEM2Q9UHN6 1383 aa17.07■□□□□ 0.32
CIITA-213ENST00000618327 RBM42Q9BTD8 480 aaKnown RBP17.07■□□□□ 0.32
CIITA-213ENST00000618327 TSPOAP1O95153 1857 aa17.07■□□□□ 0.32
CIITA-213ENST00000618327 AMOTQ4VCS5 1084 aa17.07■□□□□ 0.32
CIITA-213ENST00000618327 ZRANB1Q9UGI0 708 aa17.07■□□□□ 0.32
CIITA-213ENST00000618327 SPATA31E1Q6ZUB1 1445 aa17.07■□□□□ 0.32
CIITA-213ENST00000618327 TRPM2O94759 1503 aa17.06■□□□□ 0.32
CIITA-213ENST00000618327 HSP90AB2PQ58FF8 381 aa17.06■□□□□ 0.32
CIITA-213ENST00000618327 SSH1Q8WYL5 1049 aa17.06■□□□□ 0.32
CIITA-213ENST00000618327 POLKQ9UBT6 870 aa17.06■□□□□ 0.32
CIITA-213ENST00000618327 NCKAP5LQ9HCH0 1330 aa17.06■□□□□ 0.32
CIITA-213ENST00000618327 ST18O60284 1047 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms