RNA–Protein interactions for RNA: ENST00000613856.4

SLIRP-212, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SLIRP, Length 420 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-212ENST00000613856 TNS3Q68CZ2 1445 aa15.96■□□□□ 0.15
SLIRP-212ENST00000613856 KRT27Q7Z3Y8 459 aa15.96■□□□□ 0.15
SLIRP-212ENST00000613856 TESK2Q96S53 571 aa15.96■□□□□ 0.15
SLIRP-212ENST00000613856 CCDC9Q9Y3X0 531 aaKnown RBP15.96■□□□□ 0.15
SLIRP-212ENST00000613856 CCDC7Q96M83 1385 aa15.96■□□□□ 0.15
SLIRP-212ENST00000613856 TNS1Q9HBL0 1735 aaKnown RBP15.95■□□□□ 0.14
SLIRP-212ENST00000613856 SLC24A1O60721 1099 aa15.95■□□□□ 0.14
SLIRP-212ENST00000613856 SF3B2Q13435 895 aaKnown RBP15.95■□□□□ 0.14
SLIRP-212ENST00000613856 CENPJQ9HC77 1338 aaPredicted RBP15.94■□□□□ 0.14
SLIRP-212ENST00000613856 ONECUT3O60422 494 aaPredicted RBP15.94■□□□□ 0.14
SLIRP-212ENST00000613856 WASHC2AQ641Q2 1341 aa15.94■□□□□ 0.14
SLIRP-212ENST00000613856 FAM83GA6ND36 823 aa15.93■□□□□ 0.14
SLIRP-212ENST00000613856 EN1Q05925 392 aaPredicted RBP15.93■□□□□ 0.14
SLIRP-212ENST00000613856 TRAK1Q9UPV9 953 aa15.93■□□□□ 0.14
SLIRP-212ENST00000613856 RGPD1P0DJD0 1748 aa15.93■□□□□ 0.14
SLIRP-212ENST00000613856 KIF7Q2M1P5 1343 aa15.93■□□□□ 0.14
SLIRP-212ENST00000613856 TRPM3Q9HCF6 1732 aaPredicted RBP15.92■□□□□ 0.14
SLIRP-212ENST00000613856 HAP1P54257 671 aaPredicted RBP15.92■□□□□ 0.14
SLIRP-212ENST00000613856 FAM98CQ17RN3 349 aaKnown RBP15.92■□□□□ 0.14
SLIRP-212ENST00000613856 SIRT1Q96EB6 747 aa15.92■□□□□ 0.14
SLIRP-212ENST00000613856 A0A0G2JS52 829 aa15.91■□□□□ 0.14
SLIRP-212ENST00000613856 C11orf95C9JLR9 678 aaPredicted RBP15.91■□□□□ 0.14
SLIRP-212ENST00000613856 MYT1Q01538 1121 aa15.91■□□□□ 0.14
SLIRP-212ENST00000613856 LMOD2Q6P5Q4 547 aa15.91■□□□□ 0.14
SLIRP-212ENST00000613856 TMF1P82094 1093 aa15.9■□□□□ 0.14
SLIRP-212ENST00000613856 R3HDM1Q15032 1099 aaKnown RBP15.9■□□□□ 0.14
SLIRP-212ENST00000613856 PHF8Q9UPP1 1060 aa15.9■□□□□ 0.14
SLIRP-212ENST00000613856 ADGRB2O60241 1585 aa15.9■□□□□ 0.14
SLIRP-212ENST00000613856 TULP4Q9NRJ4 1543 aa15.89■□□□□ 0.13
SLIRP-212ENST00000613856 CRYBG1Q9Y4K1 1723 aa15.89■□□□□ 0.13
SLIRP-212ENST00000613856 MYOM1P52179 1685 aa15.89■□□□□ 0.13
SLIRP-212ENST00000613856 ALS2Q96Q42 1657 aa15.89■□□□□ 0.13
SLIRP-212ENST00000613856 THSD7AQ9UPZ6 1657 aa15.89■□□□□ 0.13
SLIRP-212ENST00000613856 BAG6P46379 1132 aa15.88■□□□□ 0.13
SLIRP-212ENST00000613856 SAFB2Q14151 953 aaKnown RBP eCLIP15.88■□□□□ 0.13
SLIRP-212ENST00000613856 CDCA8Q53HL2 280 aa15.87■□□□□ 0.13
SLIRP-212ENST00000613856 PMFBP1Q8TBY8 1022 aa15.87■□□□□ 0.13
SLIRP-212ENST00000613856 SBNO1A3KN83 1393 aa15.87■□□□□ 0.13
SLIRP-212ENST00000613856 COL14A1Q05707 1796 aaKnown RBP15.86■□□□□ 0.13
SLIRP-212ENST00000613856 PRAM1Q96QH2 718 aa15.86■□□□□ 0.13
SLIRP-212ENST00000613856 BTG4Q9NY30 223 aa15.86■□□□□ 0.13
SLIRP-212ENST00000613856 EZH2Q15910 746 aaKnown RBP15.85■□□□□ 0.13
SLIRP-212ENST00000613856 DIEXFQ68CQ4 756 aaKnown RBP15.84■□□□□ 0.13
SLIRP-212ENST00000613856 PUS7Q96PZ0 661 aaKnown RBP15.84■□□□□ 0.13
SLIRP-212ENST00000613856 POGKQ9P215 609 aa15.84■□□□□ 0.13
SLIRP-212ENST00000613856 PSME1Q06323 249 aa15.83■□□□□ 0.12
SLIRP-212ENST00000613856 ARHGEF10O15013 1369 aa15.83■□□□□ 0.12
SLIRP-212ENST00000613856 EVC2Q86UK5 1308 aa15.82■□□□□ 0.12
SLIRP-212ENST00000613856 NUP188Q5SRE5 1749 aa15.82■□□□□ 0.12
SLIRP-212ENST00000613856 DISP2A7MBM2 1401 aa15.81■□□□□ 0.12
SLIRP-212ENST00000613856 DDX10Q13206 875 aaKnown RBP15.81■□□□□ 0.12
SLIRP-212ENST00000613856 SPATA31A5Q5VU36 1347 aa15.81■□□□□ 0.12
SLIRP-212ENST00000613856 SPATA31A7Q8IWB4 1347 aa15.81■□□□□ 0.12
SLIRP-212ENST00000613856 RREB1Q92766 1687 aa15.81■□□□□ 0.12
SLIRP-212ENST00000613856 PRR36Q9H6K5 1346 aa15.8■□□□□ 0.12
SLIRP-212ENST00000613856 TRIM37O94972 964 aa15.79■□□□□ 0.12
SLIRP-212ENST00000613856 NINLQ9Y2I6 1382 aa15.78■□□□□ 0.12
SLIRP-212ENST00000613856 MINK1Q8N4C8 1332 aaPredicted RBP15.78■□□□□ 0.12
SLIRP-212ENST00000613856 CAMKK2Q96RR4 588 aa15.78■□□□□ 0.12
SLIRP-212ENST00000613856 TOPAZ1Q8N9V7 1692 aa15.78■□□□□ 0.12
SLIRP-212ENST00000613856 PHRF1Q9P1Y6 1649 aaKnown RBP15.78■□□□□ 0.12
SLIRP-212ENST00000613856 ANKARQ7Z5J8 1434 aa15.77■□□□□ 0.11
SLIRP-212ENST00000613856 CAMTA1Q9Y6Y1 1673 aa15.76■□□□□ 0.11
SLIRP-212ENST00000613856 CHRNA2Q15822 529 aa15.76■□□□□ 0.11
SLIRP-212ENST00000613856 ITSN1Q15811 1721 aa15.76■□□□□ 0.11
SLIRP-212ENST00000613856 POLR3GLQ9BT43 218 aa15.75■□□□□ 0.11
SLIRP-212ENST00000613856 ATP7BP35670 1465 aa15.74■□□□□ 0.11
SLIRP-212ENST00000613856 YY1P25490 414 aa15.74■□□□□ 0.11
SLIRP-212ENST00000613856 SPATA31A1Q5TZJ5 1347 aa15.73■□□□□ 0.11
SLIRP-212ENST00000613856 WASLO00401 505 aaPredicted RBP15.73■□□□□ 0.11
SLIRP-212ENST00000613856 KIAA0232Q92628 1395 aa15.73■□□□□ 0.11
SLIRP-212ENST00000613856 APBA3O96018 575 aa15.72■□□□□ 0.11
SLIRP-212ENST00000613856 CDK19Q9BWU1 502 aa15.72■□□□□ 0.11
SLIRP-212ENST00000613856 PRDM11Q9NQV5 511 aa15.72■□□□□ 0.11
SLIRP-212ENST00000613856 STRN4Q9NRL3 753 aa15.72■□□□□ 0.11
SLIRP-212ENST00000613856 SRPK2P78362 688 aaKnown RBP15.71■□□□□ 0.11
SLIRP-212ENST00000613856 CABP2Q9NPB3 220 aa15.71■□□□□ 0.11
SLIRP-212ENST00000613856 USP35Q9P2H5 1018 aa15.71■□□□□ 0.11
SLIRP-212ENST00000613856 AKAP12Q02952 1782 aa15.7■□□□□ 0.1
SLIRP-212ENST00000613856 PAK3O75914 559 aaPredicted RBP15.7■□□□□ 0.1
SLIRP-212ENST00000613856 NUTM2GQ5VZR2 741 aa15.7■□□□□ 0.1
SLIRP-212ENST00000613856 ANKRD36BQ8N2N9 1353 aa15.69■□□□□ 0.1
SLIRP-212ENST00000613856 MON2Q7Z3U7 1717 aa15.68■□□□□ 0.1
SLIRP-212ENST00000613856 NRKQ7Z2Y5 1582 aa15.68■□□□□ 0.1
SLIRP-212ENST00000613856 CD163L1Q9NR16 1453 aa15.68■□□□□ 0.1
SLIRP-212ENST00000613856 ZC3H6P61129 1189 aaKnown RBP15.68■□□□□ 0.1
SLIRP-212ENST00000613856 FAM196AQ6ZSG2 479 aa15.68■□□□□ 0.1
SLIRP-212ENST00000613856 PANK3Q9H999 370 aa15.67■□□□□ 0.1
SLIRP-212ENST00000613856 LMO7Q8WWI1 1683 aa15.67■□□□□ 0.1
SLIRP-212ENST00000613856 PER1O15534 1290 aaPredicted RBP15.66■□□□□ 0.1
SLIRP-212ENST00000613856 NGDNQ8NEJ9 315 aaKnown RBP15.66■□□□□ 0.1
SLIRP-212ENST00000613856 PPIP5K1Q6PFW1 1433 aa15.66■□□□□ 0.1
SLIRP-212ENST00000613856 SSH2Q76I76 1423 aa15.66■□□□□ 0.1
SLIRP-212ENST00000613856 NPC1L1Q9UHC9 1359 aa15.65■□□□□ 0.1
SLIRP-212ENST00000613856 SBF2Q86WG5 1849 aa15.65■□□□□ 0.1
SLIRP-212ENST00000613856 CASZ1Q86V15 1759 aa15.64■□□□□ 0.1
SLIRP-212ENST00000613856 A0A1W2PP64 1363 aa15.64■□□□□ 0.09
SLIRP-212ENST00000613856 KTN1Q86UP2 1357 aaKnown RBP15.64■□□□□ 0.09
SLIRP-212ENST00000613856 PARD3Q8TEW0 1356 aa15.64■□□□□ 0.09
SLIRP-212ENST00000613856 ANP32CO43423 234 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms