RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 SCRIBQ14160 1630 aa9.41□□□□□ -0.9
LINC00540-201ENST00000611481 PLEKHG3A1L390 1219 aa9.4□□□□□ -0.9
LINC00540-201ENST00000611481 MTMR2Q13614 643 aa9.4□□□□□ -0.9
LINC00540-201ENST00000611481 LINC01559Q495D7 138 aa9.4□□□□□ -0.9
LINC00540-201ENST00000611481 VARSP26640 1264 aaKnown RBP9.39□□□□□ -0.91
LINC00540-201ENST00000611481 AMHR2Q16671 573 aa9.39□□□□□ -0.91
LINC00540-201ENST00000611481 BARGINQ6ZT62 677 aa9.39□□□□□ -0.91
LINC00540-201ENST00000611481 NPAS3Q8IXF0 933 aa9.39□□□□□ -0.91
LINC00540-201ENST00000611481 ZNF511Q8NB15 262 aa9.39□□□□□ -0.91
LINC00540-201ENST00000611481 MPNDQ8N594 471 aa9.38□□□□□ -0.91
LINC00540-201ENST00000611481 GIGYF2Q6Y7W6 1299 aaKnown RBP9.37□□□□□ -0.91
LINC00540-201ENST00000611481 IRF7Q92985 503 aa9.37□□□□□ -0.91
LINC00540-201ENST00000611481 TLL2Q9Y6L7 1015 aa9.37□□□□□ -0.91
LINC00540-201ENST00000611481 GJA5P36382 358 aa9.36□□□□□ -0.91
LINC00540-201ENST00000611481 BEGAINQ9BUH8 593 aa9.36□□□□□ -0.91
LINC00540-201ENST00000611481 FAM181BA6NEQ2 426 aa9.35□□□□□ -0.91
LINC00540-201ENST00000611481 ZMYND10O75800 440 aa9.35□□□□□ -0.91
LINC00540-201ENST00000611481 NNTQ13423 1086 aa9.35□□□□□ -0.91
LINC00540-201ENST00000611481 DIXDC1Q155Q3 683 aa9.35□□□□□ -0.91
LINC00540-201ENST00000611481 ZFP42Q96MM3 310 aa9.35□□□□□ -0.91
LINC00540-201ENST00000611481 GMPRP36959 345 aa9.34□□□□□ -0.91
LINC00540-201ENST00000611481 LYPD8Q6UX82 237 aa9.34□□□□□ -0.91
LINC00540-201ENST00000611481 THOC2Q8NI27 1593 aaKnown RBP9.33□□□□□ -0.92
LINC00540-201ENST00000611481 H3BM21 787 aa9.33□□□□□ -0.92
LINC00540-201ENST00000611481 CTHP32929 405 aa9.33□□□□□ -0.92
LINC00540-201ENST00000611481 FAM174AQ8TBP5 190 aa9.33□□□□□ -0.92
LINC00540-201ENST00000611481 TBC1D2Q9BYX2 928 aa9.33□□□□□ -0.92
LINC00540-201ENST00000611481 NESP48681 1621 aa9.32□□□□□ -0.92
LINC00540-201ENST00000611481 SCARF1Q14162 830 aa9.32□□□□□ -0.92
LINC00540-201ENST00000611481 RSBN1LQ6PCB5 846 aaPredicted RBP9.32□□□□□ -0.92
LINC00540-201ENST00000611481 ADH1CP00326 375 aa9.31□□□□□ -0.92
LINC00540-201ENST00000611481 VEGFBP49765 207 aa9.31□□□□□ -0.92
LINC00540-201ENST00000611481 WDR4P57081 412 aaKnown RBP9.31□□□□□ -0.92
LINC00540-201ENST00000611481 MRPL14Q6P1L8 145 aaKnown RBP9.31□□□□□ -0.92
LINC00540-201ENST00000611481 TIMP2P16035 220 aa9.3□□□□□ -0.92
LINC00540-201ENST00000611481 ZSCAN1Q8NBB4 408 aa9.3□□□□□ -0.92
LINC00540-201ENST00000611481 ZC3H15Q8WU90 426 aaKnown RBP9.3□□□□□ -0.92
LINC00540-201ENST00000611481 SPTLC1O15269 473 aa9.29□□□□□ -0.92
LINC00540-201ENST00000611481 ZBTB3Q9H5J0 574 aa9.29□□□□□ -0.92
LINC00540-201ENST00000611481 PCDHB15Q9Y5E8 787 aa9.29□□□□□ -0.92
LINC00540-201ENST00000611481 CFAP99D6REC4 459 aa9.28□□□□□ -0.92
LINC00540-201ENST00000611481 CDK15Q96Q40 435 aa9.28□□□□□ -0.92
LINC00540-201ENST00000611481 PURBQ96QR8 312 aaKnown RBP9.28□□□□□ -0.92
LINC00540-201ENST00000611481 HRCP23327 699 aa9.27□□□□□ -0.93
LINC00540-201ENST00000611481 PARP9Q8IXQ6 854 aa9.27□□□□□ -0.93
LINC00540-201ENST00000611481 KLF16Q9BXK1 252 aaPredicted RBP9.27□□□□□ -0.93
LINC00540-201ENST00000611481 ERBB4Q15303 1308 aa9.27□□□□□ -0.93
LINC00540-201ENST00000611481 F12P00748 615 aaPredicted RBP9.26□□□□□ -0.93
LINC00540-201ENST00000611481 LORP23490 312 aaPredicted RBP9.26□□□□□ -0.93
LINC00540-201ENST00000611481 ARID5BQ14865 1188 aa9.26□□□□□ -0.93
LINC00540-201ENST00000611481 PRPF38BQ5VTL8 546 aaKnown RBP9.26□□□□□ -0.93
LINC00540-201ENST00000611481 FOXJ1Q92949 421 aa9.26□□□□□ -0.93
LINC00540-201ENST00000611481 MAP10Q9P2G4 905 aa9.26□□□□□ -0.93
LINC00540-201ENST00000611481 BAZ1AQ9NRL2 1556 aaPredicted RBP9.25□□□□□ -0.93
LINC00540-201ENST00000611481 RIC3Q7Z5B4 369 aa9.25□□□□□ -0.93
LINC00540-201ENST00000611481 SMARCA2P51531 1590 aa9.24□□□□□ -0.93
LINC00540-201ENST00000611481 RIMBP3CA6NJZ7 1639 aa9.24□□□□□ -0.93
LINC00540-201ENST00000611481 RIMBP3BA6NNM3 1639 aa9.24□□□□□ -0.93
LINC00540-201ENST00000611481 RIMBP3Q9UFD9 1639 aa9.24□□□□□ -0.93
LINC00540-201ENST00000611481 NR5A1Q13285 461 aa9.24□□□□□ -0.93
LINC00540-201ENST00000611481 AGERQ15109 404 aa9.24□□□□□ -0.93
LINC00540-201ENST00000611481 TRIM66O15016 1216 aa9.23□□□□□ -0.93
LINC00540-201ENST00000611481 ZIC2O95409 532 aaPredicted RBP9.23□□□□□ -0.93
LINC00540-201ENST00000611481 BPHLQ86WA6 291 aaPredicted RBP9.23□□□□□ -0.93
LINC00540-201ENST00000611481 CABLES1Q8TDN4 633 aa9.22□□□□□ -0.93
LINC00540-201ENST00000611481 ZFAND3Q9H8U3 227 aa9.22□□□□□ -0.93
LINC00540-201ENST00000611481 SOBPA7XYQ1 873 aa9.21□□□□□ -0.94
LINC00540-201ENST00000611481 MAN1A2O60476 641 aa9.21□□□□□ -0.94
LINC00540-201ENST00000611481 CSPP1Q1MSJ5 1256 aa9.21□□□□□ -0.94
LINC00540-201ENST00000611481 ITPKCQ96DU7 683 aa9.21□□□□□ -0.94
LINC00540-201ENST00000611481 AK7Q96M32 723 aa9.21□□□□□ -0.94
LINC00540-201ENST00000611481 NR3C2P08235 984 aa9.2□□□□□ -0.94
LINC00540-201ENST00000611481 VSIG8P0DPA2 414 aa9.2□□□□□ -0.94
LINC00540-201ENST00000611481 GRM5P41594 1212 aa9.2□□□□□ -0.94
LINC00540-201ENST00000611481 C4orf48Q5BLP8 95 aa9.2□□□□□ -0.94
LINC00540-201ENST00000611481 C6orf118Q5T5N4 469 aa9.2□□□□□ -0.94
LINC00540-201ENST00000611481 ARMC2Q8NEN0 867 aa9.2□□□□□ -0.94
LINC00540-201ENST00000611481 NUTM2BA6NNL0 878 aaPredicted RBP9.19□□□□□ -0.94
LINC00540-201ENST00000611481 NUTM2EB1AL46 878 aaPredicted RBP9.19□□□□□ -0.94
LINC00540-201ENST00000611481 PER1O15534 1290 aaPredicted RBP9.19□□□□□ -0.94
LINC00540-201ENST00000611481 UPP2O95045 317 aa9.19□□□□□ -0.94
LINC00540-201ENST00000611481 NUTM2DQ5VT03 806 aaPredicted RBP9.19□□□□□ -0.94
LINC00540-201ENST00000611481 NUTM2AQ8IVF1 878 aaPredicted RBP9.19□□□□□ -0.94
LINC00540-201ENST00000611481 TSC1Q92574 1164 aa9.19□□□□□ -0.94
LINC00540-201ENST00000611481 BMP2P12643 396 aa9.17□□□□□ -0.94
LINC00540-201ENST00000611481 TUSC1Q2TAM9 212 aa9.17□□□□□ -0.94
LINC00540-201ENST00000611481 NCAPD3P42695 1498 aa9.16□□□□□ -0.94
LINC00540-201ENST00000611481 QPCTQ16769 361 aa9.16□□□□□ -0.94
LINC00540-201ENST00000611481 NBPF14Q5TI25 921 aa9.16□□□□□ -0.94
LINC00540-201ENST00000611481 MYSM1Q5VVJ2 828 aa9.16□□□□□ -0.94
LINC00540-201ENST00000611481 CYB5RLQ6IPT4 315 aa9.16□□□□□ -0.94
LINC00540-201ENST00000611481 MEIOBQ8N635 442 aa9.16□□□□□ -0.94
LINC00540-201ENST00000611481 C1QTNF2Q9BXJ5 285 aa9.16□□□□□ -0.94
LINC00540-201ENST00000611481 LIMD1Q9UGP4 676 aa9.16□□□□□ -0.94
LINC00540-201ENST00000611481 LILRB3O75022 631 aa9.15□□□□□ -0.94
LINC00540-201ENST00000611481 LINC00528Q8N1L1 170 aa9.15□□□□□ -0.94
LINC00540-201ENST00000611481 HELBQ8NG08 1087 aaPredicted RBP9.15□□□□□ -0.94
LINC00540-201ENST00000611481 MAP4K5Q9Y4K4 846 aa9.15□□□□□ -0.94
LINC00540-201ENST00000611481 KIF21AQ7Z4S6 1674 aa9.14□□□□□ -0.95
LINC00540-201ENST00000611481 PPFIA3O75145 1194 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms