RNA–Protein interactions for RNA: ENST00000600236.1

HIF3A-217, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 313 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-217ENST00000600236 MYT1Q01538 1121 aa16.46■□□□□ 0.23
HIF3A-217ENST00000600236 NBPF1Q3BBV0 1214 aa16.46■□□□□ 0.23
HIF3A-217ENST00000600236 PRDM11Q9NQV5 511 aa16.46■□□□□ 0.23
HIF3A-217ENST00000600236 ALS2Q96Q42 1657 aa16.46■□□□□ 0.23
HIF3A-217ENST00000600236 SRPK2P78362 688 aaKnown RBP16.45■□□□□ 0.22
HIF3A-217ENST00000600236 SF3B2Q13435 895 aaKnown RBP16.45■□□□□ 0.22
HIF3A-217ENST00000600236 POLR3AO14802 1390 aaPredicted RBP16.45■□□□□ 0.22
HIF3A-217ENST00000600236 BLMP54132 1417 aaPredicted RBP16.45■□□□□ 0.22
HIF3A-217ENST00000600236 ACEP12821 1306 aa16.45■□□□□ 0.22
HIF3A-217ENST00000600236 ONECUT3O60422 494 aaPredicted RBP16.44■□□□□ 0.22
HIF3A-217ENST00000600236 ZRANB1Q9UGI0 708 aa16.44■□□□□ 0.22
HIF3A-217ENST00000600236 PLEKHG3A1L390 1219 aa16.43■□□□□ 0.22
HIF3A-217ENST00000600236 KRT27Q7Z3Y8 459 aa16.43■□□□□ 0.22
HIF3A-217ENST00000600236 L3MBTL2Q969R5 705 aa16.43■□□□□ 0.22
HIF3A-217ENST00000600236 COL14A1Q05707 1796 aaKnown RBP16.43■□□□□ 0.22
HIF3A-217ENST00000600236 NBPF8Q3BBV2 869 aa16.42■□□□□ 0.22
HIF3A-217ENST00000600236 FAM98CQ17RN3 349 aaKnown RBP16.4■□□□□ 0.22
HIF3A-217ENST00000600236 ABTB2Q8N961 1025 aa16.4■□□□□ 0.22
HIF3A-217ENST00000600236 KIAA0232Q92628 1395 aa16.39■□□□□ 0.21
HIF3A-217ENST00000600236 PPIP5K1Q6PFW1 1433 aa16.39■□□□□ 0.21
HIF3A-217ENST00000600236 NEUROD1Q13562 356 aa16.39■□□□□ 0.21
HIF3A-217ENST00000600236 NUTM2GQ5VZR2 741 aa16.39■□□□□ 0.21
HIF3A-217ENST00000600236 TOPAZ1Q8N9V7 1692 aa16.39■□□□□ 0.21
HIF3A-217ENST00000600236 SPATA31A5Q5VU36 1347 aa16.39■□□□□ 0.21
HIF3A-217ENST00000600236 SPATA31A7Q8IWB4 1347 aa16.39■□□□□ 0.21
HIF3A-217ENST00000600236 NRAPQ86VF7 1730 aa16.39■□□□□ 0.21
HIF3A-217ENST00000600236 BRD4O60885 1362 aaPredicted RBP16.38■□□□□ 0.21
HIF3A-217ENST00000600236 SIN3AQ96ST3 1273 aa16.38■□□□□ 0.21
HIF3A-217ENST00000600236 CABP2Q9NPB3 220 aa16.38■□□□□ 0.21
HIF3A-217ENST00000600236 ROCK2O75116 1388 aaKnown RBP16.38■□□□□ 0.21
HIF3A-217ENST00000600236 ZC3H6P61129 1189 aaKnown RBP16.37■□□□□ 0.21
HIF3A-217ENST00000600236 NLRP13Q86W25 1043 aa16.37■□□□□ 0.21
HIF3A-217ENST00000600236 EVC2Q86UK5 1308 aa16.37■□□□□ 0.21
HIF3A-217ENST00000600236 STRN4Q9NRL3 753 aa16.36■□□□□ 0.21
HIF3A-217ENST00000600236 CRYBG1Q9Y4K1 1723 aa16.36■□□□□ 0.21
HIF3A-217ENST00000600236 EVA1CP58658 441 aa16.35■□□□□ 0.21
HIF3A-217ENST00000600236 CHRNA2Q15822 529 aa16.35■□□□□ 0.21
HIF3A-217ENST00000600236 BAG6P46379 1132 aa16.34■□□□□ 0.21
HIF3A-217ENST00000600236 PHRF1Q9P1Y6 1649 aaKnown RBP16.34■□□□□ 0.21
HIF3A-217ENST00000600236 DEFB132Q7Z7B7 95 aa16.33■□□□□ 0.2
HIF3A-217ENST00000600236 CABP1Q9NZU7 370 aa16.33■□□□□ 0.2
HIF3A-217ENST00000600236 USP19O94966 1318 aa16.33■□□□□ 0.2
HIF3A-217ENST00000600236 SPATA31A1Q5TZJ5 1347 aa16.33■□□□□ 0.2
HIF3A-217ENST00000600236 CPDO75976 1380 aa16.33■□□□□ 0.2
HIF3A-217ENST00000600236 QRICH2Q9H0J4 1663 aa16.33■□□□□ 0.2
HIF3A-217ENST00000600236 BRWD3Q6RI45 1802 aa16.32■□□□□ 0.2
HIF3A-217ENST00000600236 TRPM1Q7Z4N2 1603 aa16.31■□□□□ 0.2
HIF3A-217ENST00000600236 NRKQ7Z2Y5 1582 aa16.31■□□□□ 0.2
HIF3A-217ENST00000600236 USP6P35125 1406 aa16.31■□□□□ 0.2
HIF3A-217ENST00000600236 GCP02774 474 aa16.31■□□□□ 0.2
HIF3A-217ENST00000600236 SSH2Q76I76 1423 aa16.3■□□□□ 0.2
HIF3A-217ENST00000600236 NLRP6P59044 892 aa16.3■□□□□ 0.2
HIF3A-217ENST00000600236 USP35Q9P2H5 1018 aa16.3■□□□□ 0.2
HIF3A-217ENST00000600236 BARGINQ6ZT62 677 aa16.29■□□□□ 0.2
HIF3A-217ENST00000600236 ZNF692Q9BU19 519 aaPredicted RBP16.29■□□□□ 0.2
HIF3A-217ENST00000600236 TONSLQ96HA7 1378 aa16.28■□□□□ 0.2
HIF3A-217ENST00000600236 THSD7AQ9UPZ6 1657 aa16.28■□□□□ 0.2
HIF3A-217ENST00000600236 ZBTB7CA1YPR0 619 aa16.27■□□□□ 0.2
HIF3A-217ENST00000600236 PDE3BQ13370 1112 aa16.27■□□□□ 0.2
HIF3A-217ENST00000600236 FAM196AQ6ZSG2 479 aa16.27■□□□□ 0.2
HIF3A-217ENST00000600236 TCP11L2Q8N4U5 519 aa16.27■□□□□ 0.2
HIF3A-217ENST00000600236 THRAP3Q9Y2W1 955 aaKnown RBP16.27■□□□□ 0.2
HIF3A-217ENST00000600236 LARP1Q6PKG0 1096 aaKnown RBP16.26■□□□□ 0.19
HIF3A-217ENST00000600236 CARD11Q9BXL7 1154 aa16.26■□□□□ 0.19
HIF3A-217ENST00000600236 CAMTA1Q9Y6Y1 1673 aa16.25■□□□□ 0.19
HIF3A-217ENST00000600236 FAM182BQ5T319 152 aa16.25■□□□□ 0.19
HIF3A-217ENST00000600236 TTC21AQ8NDW8 1320 aa16.24■□□□□ 0.19
HIF3A-217ENST00000600236 KCNH5Q8NCM2 988 aa16.24■□□□□ 0.19
HIF3A-217ENST00000600236 AATKQ6ZMQ8 1374 aa16.24■□□□□ 0.19
HIF3A-217ENST00000600236 SBNO2Q9Y2G9 1366 aa16.24■□□□□ 0.19
HIF3A-217ENST00000600236 COL5A2P05997 1499 aaPredicted RBP16.23■□□□□ 0.19
HIF3A-217ENST00000600236 TTC21BQ7Z4L5 1316 aa16.23■□□□□ 0.19
HIF3A-217ENST00000600236 EN1Q05925 392 aaPredicted RBP16.23■□□□□ 0.19
HIF3A-217ENST00000600236 LMO7Q8WWI1 1683 aa16.23■□□□□ 0.19
HIF3A-217ENST00000600236 SLIT3O75094 1523 aa16.23■□□□□ 0.19
HIF3A-217ENST00000600236 RGPD1P0DJD0 1748 aa16.22■□□□□ 0.19
HIF3A-217ENST00000600236 DISP2A7MBM2 1401 aa16.22■□□□□ 0.19
HIF3A-217ENST00000600236 CRB1P82279 1406 aa16.22■□□□□ 0.19
HIF3A-217ENST00000600236 C11orf95C9JLR9 678 aaPredicted RBP16.22■□□□□ 0.19
HIF3A-217ENST00000600236 KTN1Q86UP2 1357 aaKnown RBP16.21■□□□□ 0.19
HIF3A-217ENST00000600236 TRIM37O94972 964 aa16.2■□□□□ 0.18
HIF3A-217ENST00000600236 TOM1L2Q6ZVM7 507 aa16.2■□□□□ 0.18
HIF3A-217ENST00000600236 CPSF1Q10570 1443 aaKnown RBP16.19■□□□□ 0.18
HIF3A-217ENST00000600236 PARD3Q8TEW0 1356 aa16.19■□□□□ 0.18
HIF3A-217ENST00000600236 APBA3O96018 575 aa16.18■□□□□ 0.18
HIF3A-217ENST00000600236 TRIM26Q12899 539 aaPredicted RBP16.18■□□□□ 0.18
HIF3A-217ENST00000600236 HDGFL2Q7Z4V5 671 aaPredicted RBP16.18■□□□□ 0.18
HIF3A-217ENST00000600236 EP400Q96L91 3159 aa16.18■□□□□ 0.18
HIF3A-217ENST00000600236 PIK3C2AO00443 1686 aa16.18■□□□□ 0.18
HIF3A-217ENST00000600236 SOX12O15370 315 aa16.17■□□□□ 0.18
HIF3A-217ENST00000600236 CSB-PGBD3P0DP91 1061 aa16.17■□□□□ 0.18
HIF3A-217ENST00000600236 ARHGEF25Q86VW2 580 aa16.17■□□□□ 0.18
HIF3A-217ENST00000600236 TMC1Q8TDI8 760 aa16.17■□□□□ 0.18
HIF3A-217ENST00000600236 CDCA7Q9BWT1 371 aaPredicted RBP16.17■□□□□ 0.18
HIF3A-217ENST00000600236 WDR17Q8IZU2 1322 aa16.17■□□□□ 0.18
HIF3A-217ENST00000600236 PSDA5PKW4 1024 aaPredicted RBP16.16■□□□□ 0.18
HIF3A-217ENST00000600236 SLC24A1O60721 1099 aa16.16■□□□□ 0.18
HIF3A-217ENST00000600236 EZH2Q15910 746 aaKnown RBP16.16■□□□□ 0.18
HIF3A-217ENST00000600236 DDB1Q16531 1140 aa16.15■□□□□ 0.18
HIF3A-217ENST00000600236 PUS7Q96PZ0 661 aaKnown RBP16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms